ENSLOCG00000015535 (Lepisosteus oculatus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSLOCG00000015535 T237377_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.708 0.708
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.708 0.708
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.708 0.708
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.708 0.708
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.708 0.708
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.708 0.708
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.708 0.708
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.708 0.708
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.708 0.708
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.708 0.708
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.708 0.708
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.708 0.708
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.708 0.708
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.708 0.708
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.708 0.708
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.708 0.708
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.702 0.702
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.702 0.702
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.702 0.702
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.702 0.702
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000019121 Paired box 1 121
ENSLOCP00000019121 Homeodomain 176 232
ENSLOCP00000019122 Paired box 1 136
ENSLOCP00000019122 Homeodomain 175 231

Links

Other Homeodomain,Paired box family TFs
Other Lepisosteus oculatus TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSONIG00000011503 Oreochromis niloticus ENSONIG00000011503 N 0.720
pax6a Danio rerio ENSDARG00000103379 I 0.713
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.713
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.713
pax6b Danio rerio ENSDARG00000045936 I 0.713
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.708
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.708
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.708
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.708
PAX6 Procavia capensis ENSPCAG00000005165 I 0.708
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.708
PAX6 Sus scrofa ENSSSCG00000013320 I 0.708
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.708
pax6 Xenopus tropicalis XB-GENE-484088 I 0.708
pax6.L Xenopus laevis XB-GENE-865046 I 0.708
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.708
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.708
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.708
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.708
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.708
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.708
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.708
PAX6 Homo sapiens ENSG00000007372 D 0.708
PAX6 Gallus gallus ENSGALG00000012123 I 0.708
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.708
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.708
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.708
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.708
PAX6 Bos taurus ENSBTAG00000004561 I 0.708
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.708
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.708
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.708
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.708
Pax6 Mus musculus ENSMUSG00000027168 D 0.708
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.708
PAX6 Microcebus murinus ENSMICG00000004089 I 0.708
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.708
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.702
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.702
pax6b Oryzias latipes ENSORLG00000009913 I 0.702
ENSTRUG00000014412 Takifugu rubripes ENSTRUG00000014412 N 0.702
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.702
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.702
ENSXMAG00000011467 Xiphophorus maculatus ENSXMAG00000011467 N 0.700