CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ENSLOCG00000015535
(
Lepisosteus oculatus
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSLOCG00000015535
T237377_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.708
0.708
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.708
0.708
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.708
0.708
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.708
0.708
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.708
0.708
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.708
0.708
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.708
0.708
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.708
0.708
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.708
0.708
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.708
0.708
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.708
0.708
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.708
0.708
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.708
0.708
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.708
0.708
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.708
0.708
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.708
0.708
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.702
0.702
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.702
0.702
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.702
0.702
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.702
0.702
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000019121
Paired box
1
121
VNQLGGVFVNGRPLPTCTRKRIIELASGGMRPCEISRILQVSNGCVSKILYRYQQTGLLCPKTIGGSKPRLLTPEVIGKIIQYKWENPSLFAWEIQGKLLAARVCKPDKIPSVSSVNRILR
ENSLOCP00000019121
Homeodomain
176
232
HRNRTVFTQEQSVALEQEFIKTQYPDIFTREKLAAEINLPEGTIRVWFSNRRAKWRR
ENSLOCP00000019122
Paired box
1
136
VNQLGGVFVNGRPLPTCTRKRIIELASGGMRPCEISRILQLHKNVFHKKIILNRQVSNGCVSKILYRYQQTGLLCPKTIGGSKPRLLTPEVIGKIIQYKWENPSLFAWEIQGKLLAARVCKPDKIPSVSSVNRILR
ENSLOCP00000019122
Homeodomain
175
231
HRNRTVFTQEQSVALEQEFIKTQYPDIFTREKLAAEINLPEGTIRVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Lepisosteus oculatus
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSONIG00000011503
Oreochromis niloticus
ENSONIG00000011503
N
0.720
pax6a
Danio rerio
ENSDARG00000103379
I
0.713
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.713
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.713
pax6b
Danio rerio
ENSDARG00000045936
I
0.713
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.708
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.708
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.708
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.708
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.708
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.708
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.708
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.708
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.708
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.708
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.708
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.708
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.708
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.708
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.708
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.708
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.708
PAX6
Homo sapiens
ENSG00000007372
D
0.708
PAX6
Gallus gallus
ENSGALG00000012123
I
0.708
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.708
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.708
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.708
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.708
PAX6
Bos taurus
ENSBTAG00000004561
I
0.708
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.708
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.708
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.708
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.708
Pax6
Mus musculus
ENSMUSG00000027168
D
0.708
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.708
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.708
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.708
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.702
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.702
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.702
ENSTRUG00000014412
Takifugu rubripes
ENSTRUG00000014412
N
0.702
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.702
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.702
ENSXMAG00000011467
Xiphophorus maculatus
ENSXMAG00000011467
N
0.700