PAX4 (Otolemur garnettii)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSOGAG00000013348 T237429_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.934 0.934
PAX4
M00351_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.934 0.934
PAX4
M03295_2.00
Homo sapiens
HKAATTAR

YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.934 0.934
PAX4
M03296_2.00
Homo sapiens
YKAATTAV

BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.934 0.934
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG

CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.934 0.934
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV

BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.934 0.934
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN

NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.934 0.934
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV

BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.934 0.934
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN

NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.934 0.934
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR

YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.934 0.934
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN

NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.934 0.934
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV

BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.934 0.934
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB

VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.934 0.934
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB

VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.934 0.934
PAX4
M10815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.934 0.934
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN

NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.934 0.934
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN

NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.934 0.934
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN

NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.934 0.934
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN

NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.934 0.934
Pax4
M00542_2.00
Mus musculus
NNNATTAN

NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.929 0.929
PAX4
M00347_2.00
Homo sapiens
NNNATND

HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.929 0.929
PAX4
M00348_2.00
Homo sapiens
NNDATTAN

NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.929 0.929
PAX4
M00349_2.00
Homo sapiens
NNNATTANN

NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.929 0.929
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000011965 Paired box 1 125
ENSOGAP00000011965 Homeodomain 167 223

Links

Other Homeodomain,Paired box family TFs
Other Otolemur garnettii TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Afo_R008534 Aptenodytes forsteri Afo_R008534 I 0.758
Alligator_sinensis_CCG000926.1 Alligator sinensis Alligator_sinensis_CCG000926.1 I 0.724
ENSAMEG00000004648 Ailuropoda melanoleuca ENSAMEG00000004648 I 0.956
PAX4 Bos taurus ENSBTAG00000000410 I 0.956
ENSBTAP00000042667-D1 Bos grunniens ENSBTAP00000042667-D1 I 0.956
PAX4 Canis familiaris ENSCAFG00000001719 I 0.962
PAX4 Choloepus hoffmanni ENSCHOG00000009265 I 0.824
PAX4 Callithrix jacchus ENSCJAG00000017652 I 0.973
PAX4 Cavia porcellus ENSCPOG00000006244 I 0.940
ENSCSAG00000010195 Chlorocebus sabaeus ENSCSAG00000010195 I 0.945
ENSDNOG00000030639 Dasypus novemcinctus ENSDNOG00000030639 I 0.835
Pax4 Dipodomys ordii ENSDORG00000000332 I 0.929
PAX4 Equus caballus ENSECAG00000008343 I 0.951
PAX4 Erinaceus europaeus ENSEEUG00000009616 I 0.934
PAX4 Felis catus ENSFCAG00000005485 I 0.945
PAX4 Homo sapiens ENSG00000106331 D 0.956
PAX4 Gorilla gorilla ENSGGOG00000002555 I 0.962
PAX4 Loxodonta africana ENSLAFG00000005297 I 0.918
PAX4 Microcebus murinus ENSMICG00000000095 I 0.967
PAX4 Myotis lucifugus ENSMLUG00000030302 I 0.813
PAX4 Macaca mulatta ENSMMUG00000015429 I 0.962
ENSMPUG00000006575 Mustela putorius furo ENSMPUG00000006575 I 0.951
Pax4 Mus musculus ENSMUSG00000029706 D 0.929
ENSNLEG00000012257 Nomascus leucogenys ENSNLEG00000012257 I 0.962
PAX4 Ornithorhynchus anatinus ENSOANG00000000819 I 0.802
ENSOARG00000001951 Ovis aries ENSOARG00000001951 I 0.956
PAX4 Oryctolagus cuniculus ENSOCUG00000001612 I 0.945
PAX4 Ochotona princeps ENSOPRG00000013381 I 0.890
ENSP00000368014 Macaca fascicularis ENSP00000368014 I 0.962
PAX4 Procavia capensis ENSPCAG00000016257 I 0.962
ENSPPYG00000017971 Pongo abelii ENSPPYG00000017971 I 0.967
PAX4 Pan troglodytes ENSPTRG00000019653 I 0.956
PAX4 Pteropus vampyrus ENSPVAG00000013944 I 0.945
Pax4 Rattus norvegicus ENSRNOG00000008020 I 0.940
PAX4 Sorex araneus ENSSARG00000004842 I 0.907
ENSSHAG00000015143 Sarcophilus harrisii ENSSHAG00000015143 I 0.857
PAX4 Sus scrofa ENSSSCG00000016591 I 0.951
ENSSTOG00000002127 Ictidomys tridecemlineatus ENSSTOG00000002127 I 0.945
PAX4 Tursiops truncatus ENSTTRG00000006056 I 0.819
Myotis_brandtii_Pax4_10010526 Myotis brandtii Myotis_brandtii_Pax4_10010526 I 0.956