CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAX3
(
Ochotona princeps
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSOPRG00000004223
T237440_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.841
0.841
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.841
0.841
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.841
0.841
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.841
0.841
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.841
0.841
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.841
0.841
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.841
0.841
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.841
0.841
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.841
0.841
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.841
0.841
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.841
0.841
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.841
0.841
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.841
0.841
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.841
0.841
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.834
0.834
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.834
0.834
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.834
0.834
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.834
0.834
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.834
0.834
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.834
0.834
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.795
0.795
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.795
0.795
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.795
0.795
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.795
0.795
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.795
0.795
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.795
0.795
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.795
0.795
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.795
0.795
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.795
0.795
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.795
0.795
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.795
0.795
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.795
0.795
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.795
0.795
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.795
0.795
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.795
0.795
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.795
0.795
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.795
0.795
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.795
0.795
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.795
0.795
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000003904
Paired box
32
157
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR
ENSOPRP00000003904
Homeodomain
244
274
XXXXXELAQRAKLTEARVQVWFSNRRARWRK
Links
Other
Homeodomain,Paired box
family TFs
Other
Ochotona princeps
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy