PAX6 (Sus scrofa)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSSSCG00000013320 T237495_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
1.000 1.000
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
1.000 1.000
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
1.000 1.000
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
1.000 1.000
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
1.000 1.000
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
1.000 1.000
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
1.000 1.000
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
1.000 1.000
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
1.000 1.000
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
1.000 1.000
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
1.000 1.000
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
1.000 1.000
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.995 0.995
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.995 0.995
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.995 0.995
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.995 0.995
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.995 0.995
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.995 0.995
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.995 0.995
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.995 0.995
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.995 0.995
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.934 0.934
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.934 0.934
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.934 0.934
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.907 0.907
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.907 0.907
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000014151 Paired box 4 128
ENSSSCP00000014151 Homeodomain 211 267

Links

Other Homeodomain,Paired box family TFs
Other Sus scrofa TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TFAP2B Homo sapiens ENSG00000008196 D 0.000
TFAP2E Homo sapiens ENSG00000116819 D 0.000
TFAP2A Homo sapiens ENSG00000137203 D 0.000
Tfap2b Mus musculus ENSMUSG00000025927 D 0.000
AP-2 Drosophila melanogaster FBgn0261953 D 0.000
Tfap2e Mus musculus ENSMUSG00000042477 D 0.000
tetur36g00810 Tetranychus urticae tetur36g00810 I 0.000
TC009922 Tribolium castaneum TC009922 I 0.000
SPU_016685 Strongylocentrotus purpuratus SPU_016685 I 0.000
YQE_10574 Dendroctonus ponderosae YQE_10574 I 0.000
Smp_157840 Schistosoma mansoni Smp_157840 I 0.000
SINV20015 Solenopsis invicta SINV20015 I 0.000
Aan_R002198 Calypte anna Aan_R002198 I 0.000
Aan_R015525 Calypte anna Aan_R015525 I 0.000
Gfo_R000728 Geospiza fortis Gfo_R000728 I 0.000
ENSP00000263046 Macaca fascicularis ENSP00000263046 I 0.000
ENSP00000263046-D1 Bos grunniens ENSP00000263046-D1 I 0.000
Cmyd_10020449 Chelonia mydas Cmyd_10020449 I 0.000
Brh_R009982 Buceros rhinoceros Brh_R009982 I 0.000
Brh_R005153 Buceros rhinoceros Brh_R005153 I 0.000
Alligator_sinensis_CCG014924.1 Alligator sinensis Alligator_sinensis_CCG014924.1 I 0.000
Alligator_sinensis_CCG010010.1 Alligator sinensis Alligator_sinensis_CCG010010.1 I 0.000
Afo_R013926 Aptenodytes forsteri Afo_R013926 I 0.000
Afo_R003239 Aptenodytes forsteri Afo_R003239 I 0.000
RPRC006848 Rhodnius prolixus RPRC006848 I 0.000
PPA19579 Pristionchus pacificus PPA19579 I 0.000
PHUM549810 Pediculus humanus PHUM549810 I 0.000
GL18109 Drosophila persimilis FBgn0155712 I 0.000
GI11327 Drosophila mojavensis FBgn0134088 I 0.000
GH14383 Drosophila grimshawi FBgn0121859 I 0.000
GG16206 Drosophila erecta FBgn0108441 I 0.000
GF23730 Drosophila ananassae FBgn0100724 I 0.000
ENSXMAG00000005803 Xiphophorus maculatus ENSXMAG00000005803 I 0.000
ENSVPAG00000012139 Vicugna pacos ENSVPAG00000012139 I 0.000
TFAP2A Tursiops truncatus ENSTTRG00000012832 I 0.000
TFAP2E Tursiops truncatus ENSTTRG00000007258 I 0.000
tfap2c Takifugu rubripes ENSTRUG00000013876 I 0.000
GM22388 Drosophila sechellia FBgn0177258 I 0.000
GD14977 Drosophila simulans FBgn0186649 I 0.000
NV15391 Nasonia vitripennis NV15391 I 0.000
MCINX002204 Melitaea cinxia MCINX002204 I 0.000
L798_10151 Zootermopsis nevadensis L798_10151 I 0.000
KGM_21443 Danaus plexippus KGM_21443 I 0.000
HMEL016834 Heliconius melpomene HMEL016834 I 0.000
GB50795 Apis mellifera GB50795 I 0.000
GA28469 Drosophila pseudoobscura FBgn0249829 I 0.000
GE23038 Drosophila yakuba FBgn0240239 I 0.000
GK18142 Drosophila willistoni FBgn0220141 I 0.000
GJ11582 Drosophila virilis FBgn0198839 I 0.000
tfap2a Takifugu rubripes ENSTRUG00000005798 I 0.000
TELCIR_24906 Teladorsagia circumcincta TELCIR_24906 I 0.000
MDOA012106 Musca domestica MDOA012106 I 0.000
LLOJ007971 Lutzomyia longipalpis LLOJ007971 I 0.000
ASTEI10011 Anopheles stephensi ASTEI10011 I 0.000
ASIS021760 Anopheles sinensis ASIS021760 I 0.000
AQUA002126 Anopheles quadriannulatus AQUA002126 I 0.000
AMIN008818 Anopheles minimus AMIN008818 I 0.000
AMEM004222 Anopheles merus AMEM004222 I 0.000
AMEC019970 Anopheles melas AMEC019970 I 0.000
AMAM003187 Anopheles maculatus AMAM003187 I 0.000
ANCCEY_07283 Ancylostoma ceylanicum ANCCEY_07283 I 0.000
D917_08051 Trichinella nativa D917_08051 I 0.000
ECPE_0000534101 Echinostoma caproni ECPE_0000534101 I 0.000
SPER_0000909201 Spirometra erinaceieuropaei SPER_0000909201 I 0.000
snap_masked-nMf.1.1.scaf31395-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf31395-processed-gene-0.2 I 0.000
PEQ_0000626601 Parascaris equorum PEQ_0000626601 I 0.000
OFLC_0000811001 Onchocerca flexuosa OFLC_0000811001 I 0.000
nOo.2.0.1.g09186 Onchocerca ochengi nOo.2.0.1.g09186 I 0.000
nAv.1.0.1.g06665 Acanthocheilonema viteae nAv.1.0.1.g06665 I 0.000
Hba_07416 Heterorhabditis bacteriophora Hba_07416 I 0.000
GPUH_0002219901 Gongylonema pulchrum GPUH_0002219901 I 0.000
GPLIN_001548200 Globodera pallida GPLIN_001548200 I 0.000
AFUN005769 Anopheles funestus AFUN005769 I 0.000
AFAF007133 Anopheles farauti AFAF007133 I 0.000
AEPI000456 Anopheles epiroticus AEPI000456 I 0.000
Sjc_0121700 Schistosoma japonicum Sjc_0121700 I 0.000
LDEC004787 Leptinotarsa decemlineata LDEC004787 I 0.000
LCUP016885 Lucilia cuprina LCUP016885 I 0.000
Sakowv30010957m.g Saccoglossus kowalevskii Sakowv30010957m.g I 0.000
yakG031910 Bos grunniens yakG031910 I 0.000
Pvit_04260 Pogona vitticeps Pvit_04260 I 0.000
Pvit_00888 Pogona vitticeps Pvit_00888 I 0.000
Myotis_brandtii_TFAP2B_10011888 Myotis brandtii Myotis_brandtii_TFAP2B_10011888 I 0.000
Myotis_brandtii_Tcfap2e_10028879 Myotis brandtii Myotis_brandtii_Tcfap2e_10028879 I 0.000
tfap2b.L Xenopus laevis XB-GENE-1188127 I 0.000
tfap2b Xenopus tropicalis XB-GENE-485026 I 0.000
tfap2c Xenopus tropicalis XB-GENE-488671 I 0.000
ADIR000123 Anopheles dirus ADIR000123 I 0.000
ACUA015133 Anopheles culicifacies ACUA015133 I 0.000
ACUA011434 Anopheles culicifacies ACUA011434 I 0.000
ACOM041150 Anopheles coluzzii ACOM041150 I 0.000
AATE014474 Anopheles atroparvus AATE014474 I 0.000
AARA002676 Anopheles arabiensis AARA002676 I 0.000
AALB003833 Anopheles albimanus AALB003833 I 0.000
tfap2e.L Xenopus laevis XB-GENE-876809 I 0.000
tfap2e Xenopus tropicalis XB-GENE-876803 I 0.000
Gfo_R008463 Geospiza fortis Gfo_R008463 I 0.000
tfap2b Tetraodon nigroviridis ENSTNIG00000014240 I 0.000
ENSLACG00000015883 Latimeria chalumnae ENSLACG00000015883 I 0.000
TFAP2A Erinaceus europaeus ENSEEUG00000002713 I 0.000
TFAP2B Equus caballus ENSECAG00000015046 I 0.000
TFAP2E Equus caballus ENSECAG00000003027 I 0.000
TFAP2B Dasypus novemcinctus ENSDNOG00000041262 I 0.000
TFAP2E Dasypus novemcinctus ENSDNOG00000036871 I 0.000
tfap2a Danio rerio ENSDARG00000059279 I 0.000
tfap2c Danio rerio ENSDARG00000040606 I 0.000
tfap2b Danio rerio ENSDARG00000012667 I 0.000
ENSCSAG00000012975 Chlorocebus sabaeus ENSCSAG00000012975 I 0.000
ENSETEG00000019509 Echinops telfairi ENSETEG00000019509 I 0.000
ENSFALG00000000745 Ficedula albicollis ENSFALG00000000745 I 0.000
ENSFALG00000012772 Ficedula albicollis ENSFALG00000012772 I 0.000
ENSLACG00000009501 Latimeria chalumnae ENSLACG00000009501 I 0.000
ENSGMOG00000009513 Gadus morhua ENSGMOG00000009513 I 0.000
ENSGMOG00000000705 Gadus morhua ENSGMOG00000000705 I 0.000
TFAP2B Gorilla gorilla ENSGGOG00000014613 I 0.000
TFAP2E Gorilla gorilla ENSGGOG00000009762 I 0.000
TFAP2B Gallus gallus ENSGALG00000016680 I 0.000
ENSGALG00000002393 Gallus gallus ENSGALG00000002393 I 0.000
ENSGACG00000002672 Gasterosteus aculeatus ENSGACG00000002672 I 0.000
TFAP2B Felis catus ENSFCAG00000015482 I 0.000
ENSCSAG00000001086 Chlorocebus sabaeus ENSCSAG00000001086 I 0.000
TFAP2E Cavia porcellus ENSCPOG00000024445 I 0.000
TFAP2C Anolis carolinensis ENSACAG00000016089 I 0.000
TFAP2B Anolis carolinensis ENSACAG00000005251 I 0.000
DAPPUDRAFT_330596 Daphnia pulex DAPPUDRAFT_330596 I 0.000
CPIJ013984 Culex quinquefasciatus CPIJ013984 I 0.000
CGI_10015578 Crassostrea gigas CGI_10015578 I 0.000
AGAP011625 Anopheles gambiae AGAP011625 I 0.000
ACYPI000357 Acyrthosiphon pisum ACYPI000357 I 0.000
ACEP15405 Atta cephalotes ACEP15405 I 0.000
AAEL006932 Aedes aegypti AAEL006932 I 0.000
ENSACAG00000017357 Anolis carolinensis ENSACAG00000017357 I 0.000
ENSAMEG00000000718 Ailuropoda melanoleuca ENSAMEG00000000718 I 0.000
ENSAMEG00000008680 Ailuropoda melanoleuca ENSAMEG00000008680 I 0.000
TFAP2B Cavia porcellus ENSCPOG00000022967 I 0.000
TFAP2B Callithrix jacchus ENSCJAG00000011561 I 0.000
TFAP2E Callithrix jacchus ENSCJAG00000001531 I 0.000
TFAP2B Canis familiaris ENSCAFG00000002156 I 0.000
TFAP2B Bos taurus ENSBTAG00000020426 I 0.000
TFAP2E Bos taurus ENSBTAG00000001959 I 0.000
ENSAPLG00000013905 Anas platyrhynchos ENSAPLG00000013905 I 0.000
ENSAPLG00000010002 Anas platyrhynchos ENSAPLG00000010002 I 0.000
ENSAMXG00000005947 Astyanax mexicanus ENSAMXG00000005947 I 0.000
CpipJ_CPIJ013984 Culex pipiens CpipJ_CPIJ013984 I 0.000
tfap2c Tetraodon nigroviridis ENSTNIG00000003840 I 0.000
TFAP2E Pan troglodytes ENSPTRG00000000523 I 0.000
ENSPSIG00000011168 Pelodiscus sinensis ENSPSIG00000011168 I 0.000
ENSPSIG00000008002 Pelodiscus sinensis ENSPSIG00000008002 I 0.000
ENSPPYG00000016700 Pongo abelii ENSPPYG00000016700 I 0.000
ENSPPYG00000001556 Pongo abelii ENSPPYG00000001556 I 0.000
ENSPFOG00000016070 Poecilia formosa ENSPFOG00000016070 I 0.000
ENSPFOG00000001600 Poecilia formosa ENSPFOG00000001600 I 0.000
ENSPANG00000026000 Papio anubis ENSPANG00000026000 I 0.000
TFAP2E Ochotona princeps ENSOPRG00000012238 I 0.000
TFAP2B Pan troglodytes ENSPTRG00000018269 I 0.000
TFAP2B Pteropus vampyrus ENSPVAG00000007479 I 0.000
Tfap2b Rattus norvegicus ENSRNOG00000011823 I 0.000
TFAP2B Taeniopygia guttata ENSTGUG00000013267 I 0.000
TFAP2E Taeniopygia guttata ENSTGUG00000001672 I 0.000
ENSSTOG00000025602 Ictidomys tridecemlineatus ENSSTOG00000025602 I 0.000
ENSSTOG00000001781 Ictidomys tridecemlineatus ENSSTOG00000001781 I 0.000
TFAP2B Sus scrofa ENSSSCG00000025535 I 0.000
ENSSHAG00000016887 Sarcophilus harrisii ENSSHAG00000016887 I 0.000
ENSSHAG00000012585 Sarcophilus harrisii ENSSHAG00000012585 I 0.000
ENSSARG00000001996 Sorex araneus ENSSARG00000001996 I 0.000
Tfap2e Rattus norvegicus ENSRNOG00000027595 I 0.000
TFAP2B Ochotona princeps ENSOPRG00000010247 I 0.000
ENSONIG00000013632 Oreochromis niloticus ENSONIG00000013632 I 0.000
TFAP2B Myotis lucifugus ENSMLUG00000016209 I 0.000
ENSMLUG00000009852 Myotis lucifugus ENSMLUG00000009852 I 0.000
TFAP2D Microcebus murinus ENSMICG00000005507 I 0.000
ENSMGAG00000014245 Meleagris gallopavo ENSMGAG00000014245 I 0.000
ENSMGAG00000004014 Meleagris gallopavo ENSMGAG00000004014 I 0.000
ENSMEUG00000007703 Macropus eugenii ENSMEUG00000007703 I 0.000
ENSLOCG00000013190 Lepisosteus oculatus ENSLOCG00000013190 I 0.000
ENSLOCG00000000725 Lepisosteus oculatus ENSLOCG00000000725 I 0.000
TFAP2E Loxodonta africana ENSLAFG00000029444 I 0.000
TFAP2B Macaca mulatta ENSMMUG00000002869 I 0.000
TFAP2E Monodelphis domestica ENSMODG00000017904 I 0.000
ENSMPUG00000009084 Mustela putorius furo ENSMPUG00000009084 I 0.000
ENSONIG00000006816 Oreochromis niloticus ENSONIG00000006816 I 0.000
TFAP2E Otolemur garnettii ENSOGAG00000029197 I 0.000
TFAP2B Otolemur garnettii ENSOGAG00000000701 I 0.000
TFAP2B Oryctolagus cuniculus ENSOCUG00000025542 I 0.000
TFAP2E Oryctolagus cuniculus ENSOCUG00000013190 I 0.000
ENSOARG00000019518 Ovis aries ENSOARG00000019518 I 0.000
ENSOARG00000012828 Ovis aries ENSOARG00000012828 I 0.000
TFAP2B Ornithorhynchus anatinus ENSOANG00000003130 I 0.000
ENSMPUG00000014894 Mustela putorius furo ENSMPUG00000014894 I 0.000
TFAP2B Loxodonta africana ENSLAFG00000027209 I 0.000