pax7a (Tetraodon nigroviridis)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSTNIG00000014797 T237512_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.984 0.984
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.984 0.984
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.984 0.984
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.984 0.984
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.984 0.984
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.984 0.984
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.984 0.984
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.984 0.984
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.984 0.984
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.984 0.984
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.984 0.984
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.984 0.984
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.984 0.984
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.984 0.984
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.984 0.984
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.984 0.984
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.984 0.984
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.984 0.984
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.984 0.984
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.956 0.956
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.956 0.956
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.956 0.956
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.956 0.956
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.956 0.956
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.956 0.956
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.956 0.956
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.956 0.956
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.956 0.956
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.956 0.956
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.956 0.956
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.956 0.956
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.956 0.956
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.951 0.951
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.951 0.951
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.951 0.951
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.951 0.951
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.951 0.951
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.951 0.951
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.951 0.951
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS

SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.841 0.841
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN

NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.841 0.841
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH

DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.841 0.841
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS

SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.841 0.841
prd
M10818_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.841 0.841
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN

NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.791 0.791
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN

NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.791 0.791
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD

HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.791 0.791
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.791 0.791
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV

BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.791 0.791
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB

VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.791 0.791
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017836 Paired box 34 159
ENSTNIP00000017836 Homeodomain 257 313

Links

Other Homeodomain,Paired box family TFs
Other Tetraodon nigroviridis TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R004209 Calypte anna Aan_R004209 I 0.000
Aan_R011063 Calypte anna Aan_R011063 I 0.000
Afo_R012154 Aptenodytes forsteri Afo_R012154 I 0.000
Afo_R013359 Aptenodytes forsteri Afo_R013359 I 0.000
Alligator_sinensis_CCG004039.1 Alligator sinensis Alligator_sinensis_CCG004039.1 I 0.000
Brh_R001640 Buceros rhinoceros Brh_R001640 I 0.000
Brh_R004433 Buceros rhinoceros Brh_R004433 I 0.000
Cmyd_10017697 Chelonia mydas Cmyd_10017697 I 0.000
ENSAMEG00000008380 Ailuropoda melanoleuca ENSAMEG00000008380 I 0.000
ENSAMEG00000017694 Ailuropoda melanoleuca ENSAMEG00000017694 I 0.000
ENSAMXG00000005897 Astyanax mexicanus ENSAMXG00000005897 I 0.000
ENSAMXG00000010595 Astyanax mexicanus ENSAMXG00000010595 I 0.000
ENSAPLG00000009708 Anas platyrhynchos ENSAPLG00000009708 I 0.000
ENSAPLG00000015442 Anas platyrhynchos ENSAPLG00000015442 I 0.000
ENSBTAP00000013193-D1 Bos grunniens ENSBTAP00000013193-D1 I 0.000
ENSCSAG00000003010 Chlorocebus sabaeus ENSCSAG00000003010 I 0.000
ENSCSAG00000013810 Chlorocebus sabaeus ENSCSAG00000013810 I 0.000
ENSDORG00000003799 Dipodomys ordii ENSDORG00000003799 I 0.000
ENSFALG00000011727 Ficedula albicollis ENSFALG00000011727 I 0.000
ENSFALG00000013442 Ficedula albicollis ENSFALG00000013442 I 0.000
ENSGMOG00000016692 Gadus morhua ENSGMOG00000016692 I 0.000
ENSLACG00000001546 Latimeria chalumnae ENSLACG00000001546 I 0.000
ENSLACG00000004013 Latimeria chalumnae ENSLACG00000004013 I 0.000
ENSLOCG00000010331 Lepisosteus oculatus ENSLOCG00000010331 I 0.000
ENSLOCG00000013738 Lepisosteus oculatus ENSLOCG00000013738 I 0.000
ENSMEUG00000003128 Macropus eugenii ENSMEUG00000003128 I 0.000
ENSMEUG00000011152 Macropus eugenii ENSMEUG00000011152 I 0.000
ENSMPUG00000010522 Mustela putorius furo ENSMPUG00000010522 I 0.000
ENSMPUG00000011075 Mustela putorius furo ENSMPUG00000011075 I 0.000
ENSNLEG00000010848 Nomascus leucogenys ENSNLEG00000010848 I 0.000
ENSNLEG00000012720 Nomascus leucogenys ENSNLEG00000012720 I 0.000
ENSOARG00000007443 Ovis aries ENSOARG00000007443 I 0.000
ENSOARG00000015078 Ovis aries ENSOARG00000015078 I 0.000
ENSONIG00000015919 Oreochromis niloticus ENSONIG00000015919 I 0.000
ENSONIG00000017217 Oreochromis niloticus ENSONIG00000017217 I 0.000
ENSP00000377218 Macaca fascicularis ENSP00000377218 I 0.000
ENSP00000384406 Macaca fascicularis ENSP00000384406 I 0.000
ENSP00000384406-D1 Bos grunniens ENSP00000384406-D1 I 0.000
ENSPANG00000014875 Papio anubis ENSPANG00000014875 I 0.000
ENSPFOG00000006505 Poecilia formosa ENSPFOG00000006505 I 0.000
ENSPPYG00000015762 Pongo abelii ENSPPYG00000015762 I 0.000
ENSPSIG00000010399 Pelodiscus sinensis ENSPSIG00000010399 I 0.000
ENSPSIG00000016830 Pelodiscus sinensis ENSPSIG00000016830 I 0.000
ENSSHAG00000002124 Sarcophilus harrisii ENSSHAG00000002124 I 0.000
ENSSHAG00000009209 Sarcophilus harrisii ENSSHAG00000009209 I 0.000
ENSSTOG00000009857 Ictidomys tridecemlineatus ENSSTOG00000009857 I 0.000
ENSTSYG00000001107 Tarsius syrichta ENSTSYG00000001107 I 0.000
ENSTSYG00000003453 Tarsius syrichta ENSTSYG00000003453 I 0.000
ENSXMAG00000004071 Xiphophorus maculatus ENSXMAG00000004071 I 0.000
ENSXMAG00000011087 Xiphophorus maculatus ENSXMAG00000011087 I 0.000
Gfo_R010481 Geospiza fortis Gfo_R010481 I 0.000
Gfo_R013143 Geospiza fortis Gfo_R013143 I 0.000
irf1 Xenopus tropicalis XB-GENE-942994 I 0.000
IRF1 Microcebus murinus ENSMICG00000008190 I 0.000
IRF1 Oryctolagus cuniculus ENSOCUG00000004165 I 0.000
IRF1 Otolemur garnettii ENSOGAG00000015489 I 0.000
IRF1 Sus scrofa ENSSSCG00000014277 I 0.000
IRF1 Anolis carolinensis ENSACAG00000012699 I 0.000
IRF1 Tursiops truncatus ENSTTRG00000002597 I 0.000
IRF1 Procavia capensis ENSPCAG00000017088 I 0.000
IRF1 Sorex araneus ENSSARG00000006226 I 0.000
IRF1 Taeniopygia guttata ENSTGUG00000001375 I 0.000
Irf1 Rattus norvegicus ENSRNOG00000008144 I 0.000
IRF1 Pan troglodytes ENSPTRG00000017216 I 0.000
IRF1 Pteropus vampyrus ENSPVAG00000000430 I 0.000
IRF1 Ornithorhynchus anatinus ENSOANG00000010695 I 0.000
IRF1 Callithrix jacchus ENSCJAG00000013013 I 0.000
IRF1 Meleagris gallopavo ENSMGAG00000008932 I 0.000
IRF1 Cavia porcellus ENSCPOG00000004848 I 0.000
IRF1 Loxodonta africana ENSLAFG00000007502 I 0.000
IRF1 Equus caballus ENSECAG00000017794 I 0.000
IRF1 Gorilla gorilla ENSGGOG00000013927 I 0.000
IRF1 Dasypus novemcinctus ENSDNOG00000035479 I 0.000
IRF1 Erinaceus europaeus ENSEEUG00000013362 I 0.000
IRF1 Felis catus ENSFCAG00000013318 I 0.000
IRF1 Myotis lucifugus ENSMLUG00000016545 I 0.000
IRF1 Macaca mulatta ENSMMUG00000008100 I 0.000
IRF1 Homo sapiens ENSG00000125347 D 0.000
Irf1 Mus musculus ENSMUSG00000018899 D 0.000
IRF1 Monodelphis domestica ENSMODG00000013963 I 0.000
IRF1 Bos taurus ENSBTAG00000031231 I 0.000
IRF1 Canis familiaris ENSCAFG00000000851 I 0.000
irf1.L Xenopus laevis XB-GENE-6255163 I 0.000
irf1.S Xenopus laevis XB-GENE-17345840 I 0.000
irf2 Danio rerio ENSDARG00000040465 I 0.000
IRF2 Felis catus ENSFCAG00000030144 I 0.000
irf2 Xenopus tropicalis XB-GENE-942910 I 0.000
IRF2 Tursiops truncatus ENSTTRG00000009391 I 0.000
IRF2 Vicugna pacos ENSVPAG00000011297 I 0.000
IRF2 Echinops telfairi ENSETEG00000003181 I 0.000
IRF2 Cavia porcellus ENSCPOG00000013097 I 0.000
IRF2 Bos taurus ENSBTAG00000010002 I 0.000
IRF2 Callithrix jacchus ENSCJAG00000005731 I 0.000
IRF2 Canis familiaris ENSCAFG00000007761 I 0.000
IRF2 Equus caballus ENSECAG00000007508 I 0.000
IRF2 Gallus gallus ENSGALG00000010642 I 0.000
IRF2 Choloepus hoffmanni ENSCHOG00000012067 I 0.000
irf2 Takifugu rubripes ENSTRUG00000001842 I 0.000
IRF2 Microcebus murinus ENSMICG00000015506 I 0.000
IRF2 Myotis lucifugus ENSMLUG00000014246 I 0.000
IRF2 Macaca mulatta ENSMMUG00000015087 I 0.000
irf2 Oryzias latipes ENSORLG00000008574 I 0.000
IRF2 Pan troglodytes ENSPTRG00000016639 I 0.000
IRF2 Ochotona princeps ENSOPRG00000005398 I 0.000
IRF2 Monodelphis domestica ENSMODG00000004393 I 0.000
IRF2 Otolemur garnettii ENSOGAG00000010966 I 0.000
IRF2 Oryctolagus cuniculus ENSOCUG00000009229 I 0.000
Irf2 Mus musculus ENSMUSG00000031627 D 0.000
IRF2 Meleagris gallopavo ENSMGAG00000006359 I 0.000
IRF2 Sus scrofa ENSSSCG00000015782 I 0.000
irf2 Gasterosteus aculeatus ENSGACG00000018763 I 0.000
IRF2 Homo sapiens ENSG00000168310 D 0.000
IRF2 Gorilla gorilla ENSGGOG00000016559 I 0.000
Irf2 Rattus norvegicus ENSRNOG00000009824 I 0.000
IRF2 Loxodonta africana ENSLAFG00000000088 I 0.000
IRF2 Taeniopygia guttata ENSTGUG00000006662 I 0.000
IRF2 Pteropus vampyrus ENSPVAG00000007078 I 0.000
irf2.L Xenopus laevis XB-GENE-942916 I 0.000
irf2.S Xenopus laevis XB-GENE-17339545 I 0.000
irf2a Danio rerio ENSDARG00000007387 I 0.000
Myotis_brandtii_IRF1_10032556 Myotis brandtii Myotis_brandtii_IRF1_10032556 I 0.000
Myotis_brandtii_IRF2_10027054 Myotis brandtii Myotis_brandtii_IRF2_10027054 I 0.000
Ogr17358 Ophisaurus gracilis Ogr17358 I 0.000
Pvit_12337 Pogona vitticeps Pvit_12337 I 0.000
Pvit_14395 Pogona vitticeps Pvit_14395 I 0.000
Tal_R004238 Tyto alba Tal_R004238 I 0.000
Tal_R005926 Tyto alba Tal_R005926 I 0.000
txndc15 Gasterosteus aculeatus ENSGACG00000020876 I 0.000
txndc15 Danio rerio ENSDARG00000043249 I 0.000
txndc15 Oryzias latipes ENSORLG00000001131 I 0.000