CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PAX3
(
Takifugu rubripes
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSTRUG00000013444
T237516_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.922
0.922
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.922
0.922
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.925
0.925
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.925
0.925
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.929
0.929
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.929
0.929
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.929
0.929
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.929
0.929
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.922
0.922
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.922
0.922
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.925
0.925
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.922
0.922
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.929
0.929
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.929
0.929
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.929
0.929
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.923
0.923
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.923
0.923
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.923
0.923
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.923
0.923
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.923
0.923
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.918
0.918
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.918
0.918
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.918
0.918
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.918
0.918
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.918
0.918
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.918
0.918
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.907
0.907
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.907
0.907
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.918
0.918
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.918
0.918
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.918
0.918
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.918
0.918
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.918
0.918
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.918
0.918
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.907
0.907
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.907
0.907
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.918
0.918
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.918
0.918
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.918
0.918
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS
SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.808
0.808
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB
VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.804
0.804
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN
NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.808
0.808
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH
DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.808
0.808
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS
SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.808
0.808
prd
M10818_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.808
0.808
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN
NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.742
0.742
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN
NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.742
0.742
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD
HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.742
0.742
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.742
0.742
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV
BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.742
0.742
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000034275
Paired box
34
159
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKPTASPELDKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSAISRVIR
ENSTRUP00000034275
Homeodomain
222
278
RRSRTTFTAEQLEELERAFERTHYPDIYTREEVAQRAKLTEARVQVWFSNRRARWRK
ENSTRUP00000034276
Paired box
38
163
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKPTASPELDKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSAISRVIR
ENSTRUP00000034276
Homeodomain
226
282
RRSRTTFTAEQLEELERAFERTHYPDIYTREEVAQRAKLTEARVQVWFSNRRARWRK
ENSTRUP00000034277
Paired box
34
159
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKPTASPELDKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSAISRVIR
ENSTRUP00000034277
Homeodomain
260
316
RRSRTTFTAEQLEELERAFERTHYPDIYTREEVAQRAKLTEARVQVWFSNRRARWRK
ENSTRUP00000034278
Paired box
34
83
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQAGVPRLRL
ENSTRUP00000034278
Homeodomain
176
232
RRSRTTFTAEQLEELERAFERTHYPDIYTREEVAQRAKLTEARVQVWFSNRRARWRK
ENSTRUP00000034279
Paired box
13
138
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKPTASPELDKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVSAISRVIR
ENSTRUP00000034279
Homeodomain
222
262
RRSRTTFTAEQLEELERAFERTHYPDIYTREEVAQRAKLTE
Links
Other
Homeodomain,Paired box
family TFs
Other
Takifugu rubripes
TFs
233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy