CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GD24898
(
Drosophila simulans
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
FBgn0196214
T237593_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB
VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
1.000
1.000
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN
NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.821
0.821
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN
NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.821
0.821
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD
HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.821
0.821
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.821
0.821
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV
BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.821
0.821
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS
SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.821
0.821
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN
NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.821
0.821
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH
DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.821
0.821
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS
SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.821
0.821
prd
M10818_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.821
0.821
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.804
0.804
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.804
0.804
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.804
0.804
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.804
0.804
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.804
0.804
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.804
0.804
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.804
0.804
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.804
0.804
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.804
0.804
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.804
0.804
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.804
0.804
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.804
0.804
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.804
0.804
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.799
0.799
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.799
0.799
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.799
0.799
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.799
0.799
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.799
0.799
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.799
0.799
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.799
0.799
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.793
0.793
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.793
0.793
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.793
0.793
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.793
0.793
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.793
0.793
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.793
0.793
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.793
0.793
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.793
0.793
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.793
0.793
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.793
0.793
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.793
0.793
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.793
0.793
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.793
0.793
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.793
0.793
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.793
0.793
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.793
0.793
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.793
0.793
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.793
0.793
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.793
0.793
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0223300
Paired box
20
141
GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLR
FBpp0223300
Homeodomain
183
239
RRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRK
Links
Other
Homeodomain,Paired box
family TFs
Other
Drosophila simulans
TFs
224 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PK12240.1
Cannabis sativa
PK12240.1
D
0.000
TB1
Oryza sativa
OS03G0706500
D
0.000
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.000
Pm030202
Prunus mume
Pm030202
I
0.000
30167.m000856
Ricinus communis
30167.m000856
I
0.000
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.000
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.000
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.000
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.000
mgf024687m
Mimulus guttatus
mgf024687m
I
0.000
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.000
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.000
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.000
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.000
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.000
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.000
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.000
Si015230m.g
Setaria italica
Si015230m.g
I
0.000
Si033183m.g
Setaria italica
Si033183m.g
I
0.000
Si038692m.g
Setaria italica
Si038692m.g
I
0.000
TCM_012252
Theobroma cacao
TCM_012252
I
0.000
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.000
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.000
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.000
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.000
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.000
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.000
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.000
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.000
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.000
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.000
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.000
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.000
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.000
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.000
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.000
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.000
MDP0000272980
Malus domestica
MDP0000272980
I
0.000
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.000
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.000
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.000
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.000
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.000
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.000
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.000
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.000
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.000
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.000
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.000
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.000
AC190734.2_FG003
Zea mays
AC190734.2_FG003
I
0.000
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.000
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.000
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.000
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.000
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.000
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.000
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.000
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.000
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.000
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.000
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.000
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.000
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.000
BRC2
Arabidopsis thaliana
AT1G68800
I
0.000
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.000
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.000
Bra004097
Brassica rapa
Bra004097
I
0.000
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.000
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.000
F775_01923
Aegilops tauschii
F775_01923
I
0.000
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.000
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.000
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.000
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.000
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.000
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.000
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.000
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.000
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.000
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.000
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.000
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.000
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.000
OS09G0410500
Oryza sativa
OS09G0410500
I
0.000
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.000
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.000
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.000
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.000
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.000
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.000
OB03G38320
Oryza brachyantha
OB03G38320
I
0.000
OBART03G31290
Oryza barthii
OBART03G31290
I
0.000
OBART09G10040
Oryza barthii
OBART09G10040
I
0.000
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.000
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.000
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.000
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.000
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.000
F775_01449
Aegilops tauschii
F775_01449
N
0.000
MDP0000224810
Malus domestica
MDP0000224810
N
0.000