GD24898 (Drosophila simulans)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		FBgn0196214 T237593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gsb-n
M03888_2.00 		Drosophila melanogaster
SCGTRWCKAATB
VATTMGWYACGS		 SELEX
Nitta et al.(2015)
gsb-n_1 		1.000 1.000
gsb
M03889_2.00 		Drosophila melanogaster
RATTMGTCACGSN
NSCGTGACKAATY		 SELEX
Nitta et al.(2015)
gsb_1 		0.821 0.821
gsb
M03890_2.00 		Drosophila melanogaster
NNNAATCRATTWNN
NNWAATYGATTNNN		 SELEX
Nitta et al.(2015)
gsb_2 		0.821 0.821
gsb
M03891_2.00 		Drosophila melanogaster
RTBDMTAATTGATTD
HAATCAATTAKHVAY		 SELEX
Nitta et al.(2015)
gsb_3 		0.821 0.821
gsb
M03892_2.00 		Drosophila melanogaster
NNTAATYGATTANN
NNTAATCRATTANN		 SELEX
Nitta et al.(2015)
gsb_4 		0.821 0.821
gsb
M03893_2.00 		Drosophila melanogaster
NSCGTGACKAATBV
BVATTMGTCACGSN		 SELEX
Nitta et al.(2015)
gsb_5 		0.821 0.821
prd
M03894_2.00 		Drosophila melanogaster
VATTVGTCACGS
SCGTGACBAATB		 SELEX
Nitta et al.(2015)
prd_1 		0.821 0.821
prd
M03895_2.00 		Drosophila melanogaster
NRATCRATYN
NRATYGATYN		 SELEX
Nitta et al.(2015)
prd_2 		0.821 0.821
prd
M06555_2.00 		Drosophila melanogaster
HSWAACNGH
DCNGTTWSD		 B1H
Mathelier et al.(2014)
MA0239.1 		0.821 0.821
prd
M09684_2.00 		Drosophila melanogaster
HMVNTHHKWMACGS
SCGTKWMDDANBKD		 Misc
Kulakovskiy et al.(2009)
prd 		0.821 0.821
prd
M10818_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$PRD_Q6 		0.821 0.821
PAX3
M00358_2.00 		Homo sapiens
NRTNNNN
NNNNAYN		 PBM
Barrera et al.(2016)
PAX3_REF 		0.804 0.804
PAX3
M03297_2.00 		Homo sapiens
TAATYRATTA
TAATYRATTA		 SELEX
Jolma et al.(2013)
PAX3_1 		0.804 0.804
PAX3
M03885_2.00 		Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN		 SELEX
Nitta et al.(2015)
PAX3_1 		0.804 0.804
PAX3
M03886_2.00 		Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY		 SELEX
Nitta et al.(2015)
PAX3_2 		0.804 0.804
PAX3
M05438_2.00 		Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1 		0.804 0.804
PAX3
M05439_2.00 		Homo sapiens
NDAATCRATTMN
NKAATYGATTHN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2 		0.804 0.804
PAX3
M05440_2.00 		Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN		 SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3 		0.804 0.804
PAX3
M09585_2.00 		Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW		 Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063 		0.804 0.804
PAX3
M10816_2.00 		Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA		 Transfac
Matys et al.(2006)
V$PAX3_01 		0.804 0.804
PAX3
M10817_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX3_B 		0.804 0.804
PAX3
M05441_2.00 		Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1 		0.804 0.804
PAX3
M05442_2.00 		Homo sapiens
NWAATCRATTAN
NTAATYGATTWN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2 		0.804 0.804
PAX3
M05443_2.00 		Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN		 SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3 		0.804 0.804
PAX3
M00352_2.00 		Homo sapiens
VNTAATYR
YRATTANB		 PBM
Barrera et al.(2016)
PAX3_G48R 		0.799 0.799
PAX3
M00353_2.00 		Homo sapiens
NNNNRTNNN
NNNAYNNNN		 PBM
Barrera et al.(2016)
PAX3_N47H 		0.799 0.799
PAX3
M00354_2.00 		Homo sapiens
NNNRYNN
NNRYNNN		 PBM
Barrera et al.(2016)
PAX3_N47K 		0.799 0.799
PAX3
M00355_2.00 		Homo sapiens
NNNATNWNN
NNWNATNNN		 PBM
Barrera et al.(2016)
PAX3_P50L 		0.799 0.799
PAX3
M00356_2.00 		Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN		 PBM
Barrera et al.(2016)
PAX3_R270C 		0.799 0.799
PAX3
M00357_2.00 		Homo sapiens
NNNATNWNN
NNWNATNNN		 PBM
Barrera et al.(2016)
PAX3_R56L 		0.799 0.799
PAX3
M00359_2.00 		Homo sapiens
NTAATYRV
BYRATTAN		 PBM
Barrera et al.(2016)
PAX3_Y90H 		0.799 0.799
Pax7
M00541_2.00 		Mus musculus
NNVATTWN
NWAATBNN		 PBM
Berger et al.(2008)
Pax7_3783 		0.793 0.793
PAX7
M03292_2.00 		Homo sapiens
WAATYRATTA
TAATYRATTW		 SELEX
Jolma et al.(2013)
PAX7_1 		0.793 0.793
PAX7
M03293_2.00 		Homo sapiens
TAATYGATTA
TAATCRATTA		 SELEX
Jolma et al.(2013)
PAX7_2 		0.793 0.793
PAX7
M05416_2.00 		Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1 		0.793 0.793
PAX7
M05417_2.00 		Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2 		0.793 0.793
PAX7
M05418_2.00 		Homo sapiens
NNAATCRATTWN
NWAATYGATTNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3 		0.793 0.793
PAX7
M05422_2.00 		Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1 		0.793 0.793
PAX7
M05423_2.00 		Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2 		0.793 0.793
PAX7
M05424_2.00 		Homo sapiens
NTAATYGATTAN
NTAATCRATTAN		 SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3 		0.793 0.793
PAX7
M05874_2.00 		Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT		 SMiLE-seq
Isakova et al.(2017)
PAX7 		0.793 0.793
Pax7
M09586_2.00 		Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1 		0.793 0.793
Pax7
M09587_2.00 		Mus musculus
DTAATYDGATTA
TAATCHRATTAH		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2 		0.793 0.793
Pax7
M09588_2.00 		Mus musculus
TAATTGATTW
WAATCAATTA		 Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3 		0.793 0.793
PAX7
M05419_2.00 		Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1 		0.793 0.793
PAX7
M05420_2.00 		Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2 		0.793 0.793
PAX7
M05421_2.00 		Homo sapiens
NNAATCRATTWN
NWAATYGATTNN		 SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3 		0.793 0.793
PAX7
M05425_2.00 		Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1 		0.793 0.793
PAX7
M05426_2.00 		Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2 		0.793 0.793
PAX7
M05427_2.00 		Homo sapiens
NTAATYGATTAN
NTAATCRATTAN		 SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3 		0.793 0.793
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0223300 Paired box 20 141
FBpp0223300 Homeodomain 183 239

Links

Other Homeodomain,Paired box family TFs
Other Drosophila simulans TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK12240.1 Cannabis sativa PK12240.1 D 0.000
TB1 Oryza sativa OS03G0706500 D 0.000
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.000
Pm030202 Prunus mume Pm030202 I 0.000
30167.m000856 Ricinus communis 30167.m000856 I 0.000
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.000
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.000
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.000
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.000
mgf024687m Mimulus guttatus mgf024687m I 0.000
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.000
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.000
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.000
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.000
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.000
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.000
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.000
Si015230m.g Setaria italica Si015230m.g I 0.000
Si033183m.g Setaria italica Si033183m.g I 0.000
Si038692m.g Setaria italica Si038692m.g I 0.000
TCM_012252 Theobroma cacao TCM_012252 I 0.000
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.000
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.000
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.000
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.000
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.000
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.000
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.000
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.000
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.000
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.000
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.000
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.000
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.000
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.000
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.000
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.000
MDP0000272980 Malus domestica MDP0000272980 I 0.000
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.000
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.000
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.000
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.000
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.000
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.000
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.000
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.000
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.000
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.000
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.000
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.000
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.000
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.000
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.000
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.000
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.000
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.000
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.000
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.000
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.000
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.000
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.000
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.000
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.000
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.000
BRC2 Arabidopsis thaliana AT1G68800 I 0.000
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.000
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.000
Bra004097 Brassica rapa Bra004097 I 0.000
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.000
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.000
F775_01923 Aegilops tauschii F775_01923 I 0.000
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.000
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.000
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.000
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.000
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.000
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.000
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.000
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.000
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.000
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.000
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.000
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.000
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.000
OS09G0410500 Oryza sativa OS09G0410500 I 0.000
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.000
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.000
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.000
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.000
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.000
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.000
OB03G38320 Oryza brachyantha OB03G38320 I 0.000
OBART03G31290 Oryza barthii OBART03G31290 I 0.000
OBART09G10040 Oryza barthii OBART09G10040 I 0.000
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.000
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.000
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.000
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.000
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.000
F775_01449 Aegilops tauschii F775_01449 N 0.000
MDP0000224810 Malus domestica MDP0000224810 N 0.000