GE14563 (Drosophila yakuba)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
FBgn0232162 T237611_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
1.000 1.000
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
1.000 1.000
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
1.000 1.000
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.912 0.912
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.912 0.912
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.912 0.912
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.907 0.907
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.907 0.907
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.907 0.907
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.907 0.907
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.907 0.907
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.907 0.907
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.907 0.907
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.907 0.907
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.907 0.907
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.907 0.907
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.907 0.907
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.907 0.907
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.901 0.901
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.901 0.901
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.901 0.901
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.901 0.901
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.901 0.901
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.901 0.901
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.901 0.901
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.901 0.901
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.901 0.901
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0259573 Paired box 29 153
FBpp0259573 Homeodomain 266 322

Links

Other Homeodomain,Paired box family TFs
Other Drosophila yakuba TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SRM1 Arabidopsis thaliana AT5G08520 D 0.000
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.000
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.000
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.000
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.000
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.000
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.000
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.000
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.000
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.000
30131.m007263 Ricinus communis 30131.m007263 I 0.000
Pm017050 Prunus mume Pm017050 I 0.000
Pm006046 Prunus mume Pm006046 I 0.000
Cla020348 Citrullus lanatus Cla020348 I 0.000
Cla009230 Citrullus lanatus Cla009230 I 0.000
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.000
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.000
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.000
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.000
MDP0000289018 Malus domestica MDP0000289018 I 0.000
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.000
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.000
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.000
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.000
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.000
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.000
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.000
PK13672.1 Cannabis sativa PK13672.1 I 0.000
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.000
Ca_19000 Cicer arietinum Ca_19000 I 0.000
Ca_05454 Cicer arietinum Ca_05454 I 0.000
Bra028654 Brassica rapa Bra028654 I 0.000
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.000
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.000
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.000
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.000
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.000
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.000
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.000
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.000
Bo9g174380 Brassica oleracea Bo9g174380 I 0.000
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.000
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.000
TCM_041160 Theobroma cacao TCM_041160 I 0.000
TCM_007672 Theobroma cacao TCM_007672 I 0.000
mgf009460m Mimulus guttatus mgf009460m I 0.000
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.000
Bo2g009130 Brassica oleracea Bo2g009130 I 0.000
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.000
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.000
Bo3g004970 Brassica oleracea Bo3g004970 I 0.000
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.000
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.000
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.000
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.000
Si022762m.g Setaria italica Si022762m.g N 0.000
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.000
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.000
OB04G36550 Oryza brachyantha OB04G36550 N 0.000
MTR_8g063600 Medicago truncatula MTR_8g063600 N 0.000
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.000
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.000
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.000