GB43792 (Apis mellifera)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
GB43792 T237617_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN

NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.846 0.846
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN

NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.846 0.846
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD

HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.846 0.846
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.846 0.846
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV

BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.846 0.846
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB

VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.846 0.846
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS

SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.835 0.835
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN

NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.835 0.835
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH

DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.835 0.835
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS

SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.835 0.835
prd
M10818_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.835 0.835
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.830 0.830
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.830 0.830
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.830 0.830
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.830 0.830
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.830 0.830
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.830 0.830
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.830 0.830
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.830 0.830
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.830 0.830
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.830 0.830
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.830 0.830
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.830 0.830
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.830 0.830
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.830 0.830
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.830 0.830
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.830 0.830
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.830 0.830
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.830 0.830
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.830 0.830
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.813 0.813
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.813 0.813
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.813 0.813
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.813 0.813
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.813 0.813
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.813 0.813
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.813 0.813
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.813 0.813
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.813 0.813
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.813 0.813
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.813 0.813
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.813 0.813
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.813 0.813
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.808 0.808
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.808 0.808
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.808 0.808
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.808 0.808
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.808 0.808
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.808 0.808
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GB43792-PA Paired box 19 143
GB43792-PA Homeodomain 188 244

Links

Other Homeodomain,Paired box family TFs
Other Apis mellifera TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R006598 Calypte anna Aan_R006598 I 0.000
Afo_R014608 Aptenodytes forsteri Afo_R014608 I 0.000
Alligator_sinensis_CCG000787.1 Alligator sinensis Alligator_sinensis_CCG000787.1 I 0.000
Brh_R010633 Buceros rhinoceros Brh_R010633 I 0.000
CGI_10025278 Crassostrea gigas CGI_10025278 I 0.000
Cmyd_10009262 Chelonia mydas Cmyd_10009262 I 0.000
ARNTL Anolis carolinensis ENSACAG00000004497 I 0.000
ENSAMEG00000002309 Ailuropoda melanoleuca ENSAMEG00000002309 I 0.000
ENSAMXG00000010089 Astyanax mexicanus ENSAMXG00000010089 I 0.000
ENSAMXG00000011758 Astyanax mexicanus ENSAMXG00000011758 I 0.000
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I 0.000
ENSAPLG00000003885 Anas platyrhynchos ENSAPLG00000003885 I 0.000
ARNTL Bos taurus ENSBTAG00000013029 I 0.000
ENSBTAP00000017323-D1 Bos grunniens ENSBTAP00000017323-D1 I 0.000
ARNTL Canis familiaris ENSCAFG00000008095 I 0.000
ARNTL Choloepus hoffmanni ENSCHOG00000000376 I 0.000
ARNTL Callithrix jacchus ENSCJAG00000010162 I 0.000
ARNTL Cavia porcellus ENSCPOG00000008795 I 0.000
ENSCSAG00000004681 Chlorocebus sabaeus ENSCSAG00000004681 I 0.000
arntl1a Danio rerio ENSDARG00000006791 I 0.000
arntl1b Danio rerio ENSDARG00000035732 I 0.000
arntl2 Danio rerio ENSDARG00000041381 I 0.000
ARNTL Dasypus novemcinctus ENSDNOG00000003841 I 0.000
Arntl Dipodomys ordii ENSDORG00000015539 I 0.000
ARNTL Equus caballus ENSECAG00000012118 I 0.000
ENSFALG00000010646 Ficedula albicollis ENSFALG00000010646 I 0.000
ARNTL Felis catus ENSFCAG00000010983 I 0.000
ARNTL Homo sapiens ENSG00000133794 D 0.000
arntl1a Gasterosteus aculeatus ENSGACG00000002445 I 0.000
ARNTL Gallus gallus ENSGALG00000005378 I 0.000
ARNTL Gorilla gorilla ENSGGOG00000013211 I 0.000
ENSGMOG00000008906 Gadus morhua ENSGMOG00000008906 I 0.000
ENSLACG00000004629 Latimeria chalumnae ENSLACG00000004629 I 0.000
ARNTL Loxodonta africana ENSLAFG00000026673 I 0.000
ENSLOCG00000003999 Lepisosteus oculatus ENSLOCG00000003999 I 0.000
ARNTL Meleagris gallopavo ENSMGAG00000005349 I 0.000
ENSMICG00000001229 Microcebus murinus ENSMICG00000001229 I 0.000
ARNTL Myotis lucifugus ENSMLUG00000008503 I 0.000
ARNTL Macaca mulatta ENSMMUG00000009690 I 0.000
ARNTL Monodelphis domestica ENSMODG00000008708 I 0.000
ENSMPUG00000013135 Mustela putorius furo ENSMPUG00000013135 I 0.000
Arntl Mus musculus ENSMUSG00000055116 D 0.000
ENSNLEG00000017674 Nomascus leucogenys ENSNLEG00000017674 I 0.000
ENSOANG00000000503 Ornithorhynchus anatinus ENSOANG00000000503 I 0.000
ENSOARG00000007809 Ovis aries ENSOARG00000007809 I 0.000
ARNTL Oryctolagus cuniculus ENSOCUG00000005940 I 0.000
ARNTL Otolemur garnettii ENSOGAG00000000736 I 0.000
ENSONIG00000010970 Oreochromis niloticus ENSONIG00000010970 I 0.000
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I 0.000
ARNTL Ochotona princeps ENSOPRG00000004853 I 0.000
arntl2 Oryzias latipes ENSORLG00000010946 I 0.000
arntl1a Oryzias latipes ENSORLG00000019370 I 0.000
ENSP00000384517 Macaca fascicularis ENSP00000384517 I 0.000
ENSPFOG00000008027 Poecilia formosa ENSPFOG00000008027 I 0.000
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I 0.000
ENSPMAG00000004171 Petromyzon marinus ENSPMAG00000004171 I 0.000
ENSPPYG00000003473 Pongo abelii ENSPPYG00000003473 I 0.000
ENSPSIG00000013131 Pelodiscus sinensis ENSPSIG00000013131 I 0.000
ARNTL Pan troglodytes ENSPTRG00000003376 I 0.000
ARNTL Pteropus vampyrus ENSPVAG00000006712 I 0.000
Arntl Rattus norvegicus ENSRNOG00000014448 D 0.000
ENSSHAG00000017357 Sarcophilus harrisii ENSSHAG00000017357 I 0.000
ARNTL Sus scrofa ENSSSCG00000013397 I 0.000
ENSSTOG00000022144 Ictidomys tridecemlineatus ENSSTOG00000022144 I 0.000
ARNTL Tupaia belangeri ENSTBEG00000017387 I 0.000
ENSTGUG00000014839 Taeniopygia guttata ENSTGUG00000014839 I 0.000
ENSTGUG00000015954 Taeniopygia guttata ENSTGUG00000015954 I 0.000
arntl1a Tetraodon nigroviridis ENSTNIG00000005490 I 0.000
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I 0.000
arntl2 Takifugu rubripes ENSTRUG00000007832 I 0.000
arntl1a Takifugu rubripes ENSTRUG00000008391 I 0.000
ENSTSYG00000000577 Tarsius syrichta ENSTSYG00000000577 I 0.000
ARNTL Tursiops truncatus ENSTTRG00000013925 I 0.000
ARNTL Vicugna pacos ENSVPAG00000005926 I 0.000
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I 0.000
ENSXMAG00000015619 Xiphophorus maculatus ENSXMAG00000015619 I 0.000
fgenesh2_pg.scaffold_279000045 Branchiostoma floridae fgenesh2_pg.scaffold_279000045 I 0.000
fgenesh2_pg.scaffold_792000016 Branchiostoma floridae fgenesh2_pg.scaffold_792000016 I 0.000
Gfo_R013617 Geospiza fortis Gfo_R013617 I 0.000
Myotis_brandtii_Arntl_10004678 Myotis brandtii Myotis_brandtii_Arntl_10004678 I 0.000
NEMVEDRAFT_v1g132249 Nematostella vectensis NEMVEDRAFT_v1g132249 I 0.000
NEMVEDRAFT_v1g224692 Nematostella vectensis NEMVEDRAFT_v1g224692 I 0.000
Ocbimv22023737m.g Octopus bimaculoides Ocbimv22023737m.g I 0.000
Ogr18318 Ophisaurus gracilis Ogr18318 I 0.000
Pvit_10294 Pogona vitticeps Pvit_10294 I 0.000
Tal_R003521 Tyto alba Tal_R003521 I 0.000
arntl.L Xenopus laevis XB-GENE-17342306 I 0.000
arntl.S Xenopus laevis XB-GENE-495459 I 0.000