MCINX015565 (Melitaea cinxia)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
MCINX015565 T237642_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gsb
M03889_2.00
Drosophila melanogaster
RATTMGTCACGSN

NSCGTGACKAATY
SELEX
Nitta et al.(2015)
gsb_1
0.805 0.805
gsb
M03890_2.00
Drosophila melanogaster
NNNAATCRATTWNN

NNWAATYGATTNNN
SELEX
Nitta et al.(2015)
gsb_2
0.805 0.805
gsb
M03891_2.00
Drosophila melanogaster
RTBDMTAATTGATTD

HAATCAATTAKHVAY
SELEX
Nitta et al.(2015)
gsb_3
0.805 0.805
gsb
M03892_2.00
Drosophila melanogaster
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
gsb_4
0.805 0.805
gsb
M03893_2.00
Drosophila melanogaster
NSCGTGACKAATBV

BVATTMGTCACGSN
SELEX
Nitta et al.(2015)
gsb_5
0.805 0.805
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.756 0.756
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.756 0.756
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.756 0.756
gsb-n
M03888_2.00
Drosophila melanogaster
SCGTRWCKAATB

VATTMGWYACGS
SELEX
Nitta et al.(2015)
gsb-n_1
0.756 0.756
prd
M03894_2.00
Drosophila melanogaster
VATTVGTCACGS

SCGTGACBAATB
SELEX
Nitta et al.(2015)
prd_1
0.756 0.756
prd
M03895_2.00
Drosophila melanogaster
NRATCRATYN

NRATYGATYN
SELEX
Nitta et al.(2015)
prd_2
0.756 0.756
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.756 0.756
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.756 0.756
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.756 0.756
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.756 0.756
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.756 0.756
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.756 0.756
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.756 0.756
prd
M06555_2.00
Drosophila melanogaster
HSWAACNGH

DCNGTTWSD
B1H
Mathelier et al.(2014)
MA0239.1
0.756 0.756
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.756 0.756
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.756 0.756
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.756 0.756
prd
M09684_2.00
Drosophila melanogaster
HMVNTHHKWMACGS

SCGTKWMDDANBKD
Misc
Kulakovskiy et al.(2009)
prd
0.756 0.756
prd
M10818_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$PRD_Q6
0.756 0.756
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.756 0.756
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.756 0.756
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.756 0.756
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.756 0.756
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.756 0.756
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.756 0.756
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.744 0.744
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.744 0.744
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.744 0.744
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.744 0.744
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.744 0.744
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.744 0.744
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.744 0.744
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.744 0.744
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.744 0.744
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.744 0.744
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.744 0.744
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.744 0.744
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.744 0.744
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.744 0.744
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.744 0.744
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.744 0.744
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.744 0.744
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.744 0.744
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.744 0.744
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCINX015565-PA Paired box 227 252
MCINX015565-PA Homeodomain 294 350

Links

Other Homeodomain,Paired box family TFs
Other Melitaea cinxia TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIBMGA009025 Bombyx mori BGIBMGA009025 I 0.939
LDEC019773 Leptinotarsa decemlineata LDEC019773 I 0.902
TC006788 Tribolium castaneum TC006788 I 0.890
CLEC002253 Cimex lectularius CLEC002253 I 0.878
ADAC005776 Anopheles darlingi ADAC005776 I 0.866
AALB001247 Anopheles albimanus AALB001247 I 0.866
PHUM375940 Pediculus humanus PHUM375940 I 0.866
ASIS005037 Anopheles sinensis ASIS005037 I 0.854
AMAM004970 Anopheles maculatus AMAM004970 I 0.854
AQUA006728 Anopheles quadriannulatus AQUA006728 I 0.841
AMIN006552 Anopheles minimus AMIN006552 I 0.841
AGAP010358 Anopheles gambiae AGAP010358 I 0.841
ASTEI06722 Anopheles stephensi ASTEI06722 I 0.841
ACHR003306 Anopheles christyi ACHR003306 I 0.841
AFAF003749 Anopheles farauti AFAF003749 I 0.841
AEPI009865 Anopheles epiroticus AEPI009865 I 0.841
ACUA004518 Anopheles culicifacies ACUA004518 I 0.841
ADIR009744 Anopheles dirus ADIR009744 I 0.841
AFUN002669 Anopheles funestus AFUN002669 I 0.841
GB43792 Apis mellifera GB43792 I 0.829
ACYPI004907 Acyrthosiphon pisum ACYPI004907 I 0.829
Hsal_08388--XP_394847.3_APIME Harpegnathos saltator Hsal_08388--XP_394847.3_APIME I 0.829
AARA005847 Anopheles arabiensis AARA005847 I 0.829
ISCW014979 Ixodes scapularis ISCW014979 I 0.829
CpipJ_CPIJ006496 Culex pipiens CpipJ_CPIJ006496 I 0.829
CPIJ006496 Culex quinquefasciatus CPIJ006496 I 0.829
GL17644 Drosophila persimilis FBgn0155247 I 0.817
GJ21022 Drosophila virilis FBgn0208157 I 0.817
GA17419 Drosophila pseudoobscura FBgn0077432 I 0.817
GH22657 Drosophila grimshawi FBgn0130115 I 0.817
Cflo_06472--XP_394847.3_APIME Camponotus floridanus Cflo_06472--XP_394847.3_APIME I 0.817
GF13361 Drosophila ananassae FBgn0090393 I 0.805
MDOA008527 Musca domestica MDOA008527 I 0.793
MDOA002110 Musca domestica MDOA002110 I 0.780
Hsal_04609--XP_394847.3_APIME Harpegnathos saltator Hsal_04609--XP_394847.3_APIME I 0.780
ENSLOCG00000004189 Lepisosteus oculatus ENSLOCG00000004189 I 0.768
ENSLACG00000006342 Latimeria chalumnae ENSLACG00000006342 I 0.768
tetur29g00530 Tetranychus urticae tetur29g00530 I 0.768
GA19807 Drosophila pseudoobscura FBgn0079803 I 0.768
PPAI006228 Phlebotomus papatasi PPAI006228 I 0.768
CGI_10026438 Crassostrea gigas CGI_10026438 I 0.768
LLOJ009941 Lutzomyia longipalpis LLOJ009941 I 0.768
ENSPSIG00000006817 Pelodiscus sinensis ENSPSIG00000006817 I 0.756
GF23439 Drosophila ananassae FBgn0100433 I 0.756
ENSPSIG00000005535 Pelodiscus sinensis ENSPSIG00000005535 I 0.756
GF11512 Drosophila ananassae FBgn0088552 I 0.756
PAX7 Oryctolagus cuniculus ENSOCUG00000006146 I 0.756
ENSPANG00000015169 Papio anubis ENSPANG00000015169 I 0.756
PAX3 Tetraodon nigroviridis ENSTNIG00000014313 I 0.756
Brh_R006623 Buceros rhinoceros Brh_R006623 I 0.756
fgenesh2_kg.scaffold_259000002 Branchiostoma floridae fgenesh2_kg.scaffold_259000002 I 0.756
GJ21339 Drosophila virilis FBgn0208469 I 0.756
fgenesh2_kg.scaffold_211000002 Branchiostoma floridae fgenesh2_kg.scaffold_211000002 I 0.756
ENSCSAG00000000870 Chlorocebus sabaeus ENSCSAG00000000870 I 0.756
ENSAPLG00000005016 Anas platyrhynchos ENSAPLG00000005016 I 0.756
AGAP010359 Anopheles gambiae AGAP010359 I 0.756
PAX3 Anolis carolinensis ENSACAG00000004981 I 0.756
Pvit_18803 Pogona vitticeps Pvit_18803 I 0.756
pax3a Danio rerio ENSDARG00000010192 I 0.756
ENSGMOG00000006159 Gadus morhua ENSGMOG00000006159 I 0.756
Cflo_07008--XP_394847.3_APIME Camponotus floridanus Cflo_07008--XP_394847.3_APIME I 0.756
Gfo_R010293 Geospiza fortis Gfo_R010293 I 0.756
AMEM007650 Anopheles merus AMEM007650 I 0.756
ENSSTOG00000008650 Ictidomys tridecemlineatus ENSSTOG00000008650 I 0.744
PAX3 Taeniopygia guttata ENSTGUG00000007761 I 0.744
PAX3 Tupaia belangeri ENSTBEG00000010268 I 0.744
pax7a Tetraodon nigroviridis ENSTNIG00000014797 I 0.744
PAX3 Tetraodon nigroviridis ENSTNIG00000015279 I 0.744
ENSP00000375921 Macaca fascicularis ENSP00000375921 I 0.744
ENSXMAG00000015270 Xiphophorus maculatus ENSXMAG00000015270 I 0.744
ENSBTAP00000013131-D1 Bos grunniens ENSBTAP00000013131-D1 I 0.744
pax7 Xenopus tropicalis XB-GENE-487140 I 0.744
pax7a Takifugu rubripes ENSTRUG00000015245 I 0.744
pax7.L Xenopus laevis XB-GENE-865678 I 0.744
PAX3 Oryzias latipes ENSORLG00000015932 I 0.744
PAX3 Equus caballus ENSECAG00000014549 I 0.744
ENSFALG00000006722 Ficedula albicollis ENSFALG00000006722 I 0.744
PAX3 Dasypus novemcinctus ENSDNOG00000001871 I 0.744
pax7a Danio rerio ENSDARG00000100398 I 0.744
pax7b Danio rerio ENSDARG00000070818 I 0.744
PAX3 Felis catus ENSFCAG00000018967 I 0.744
PAX3 Homo sapiens ENSG00000135903 D 0.744
ENSGMOG00000001549 Gadus morhua ENSGMOG00000001549 I 0.744
PAX3 Gorilla gorilla ENSGGOG00000015636 I 0.744
pax7a Gasterosteus aculeatus ENSGACG00000012890 I 0.744
PAX7 Gasterosteus aculeatus ENSGACG00000001703 I 0.744
ENSCSAVG00000004794 Ciona savignyi ENSCSAVG00000004794 I 0.744
ENSCSAG00000007841 Chlorocebus sabaeus ENSCSAG00000007841 I 0.744
ENSAMEG00000007444 Ailuropoda melanoleuca ENSAMEG00000007444 I 0.744
ENSAMXG00000003799 Astyanax mexicanus ENSAMXG00000003799 I 0.744
DAPPUDRAFT_45999 Daphnia pulex DAPPUDRAFT_45999 I 0.744
CapteG44697 Capitella teleta CapteG44697 I 0.744
ACYPI002777 Acyrthosiphon pisum ACYPI002777 I 0.744
ENSAMXG00000024811 Astyanax mexicanus ENSAMXG00000024811 I 0.744
PAX3 Bos taurus ENSBTAG00000009950 I 0.744
PAX3 Cavia porcellus ENSCPOG00000006276 I 0.744
PAX3 Callithrix jacchus ENSCJAG00000012088 I 0.744
ENSCING00000005904 Ciona intestinalis ENSCING00000005904 I 0.744
PAX3 Canis familiaris ENSCAFG00000016041 I 0.744
ENSLACG00000019159 Latimeria chalumnae ENSLACG00000019159 I 0.744
PAX3 Loxodonta africana ENSLAFG00000008041 I 0.744
ENSONIG00000014632 Oreochromis niloticus ENSONIG00000014632 I 0.744
PAX7 Oryzias latipes ENSORLG00000004269 I 0.744
ENSONIG00000014283 Oreochromis niloticus ENSONIG00000014283 I 0.744
ENSONIG00000010028 Oreochromis niloticus ENSONIG00000010028 I 0.744
PAX3 Otolemur garnettii ENSOGAG00000001304 I 0.744
ENSPANG00000008818 Papio anubis ENSPANG00000008818 I 0.744
ENSPFOG00000007769 Poecilia formosa ENSPFOG00000007769 I 0.744
Pax3 Rattus norvegicus ENSRNOG00000013670 I 0.744
PAX3 Pan troglodytes ENSPTRG00000012969 I 0.744
ENSPPYG00000013219 Pongo abelii ENSPPYG00000013219 I 0.744
ENSPFOG00000013988 Poecilia formosa ENSPFOG00000013988 I 0.744
PAX3 Oryctolagus cuniculus ENSOCUG00000017507 I 0.744
ENSOARG00000020289 Ovis aries ENSOARG00000020289 I 0.744
PAX3 Myotis lucifugus ENSMLUG00000014155 I 0.744
PAX3 Microcebus murinus ENSMICG00000000336 I 0.744
ENSMEUG00000013628 Macropus eugenii ENSMEUG00000013628 I 0.744
ENSLOCG00000003864 Lepisosteus oculatus ENSLOCG00000003864 I 0.744
PAX3 Macaca mulatta ENSMMUG00000020409 I 0.744
PAX3 Monodelphis domestica ENSMODG00000021190 I 0.744
ENSOARG00000010587 Ovis aries ENSOARG00000010587 I 0.744
ENSNLEG00000009611 Nomascus leucogenys ENSNLEG00000009611 I 0.744
Pax3 Mus musculus ENSMUSG00000004872 I 0.744
ENSMPUG00000016673 Mustela putorius furo ENSMPUG00000016673 I 0.744
ENSSHAG00000016542 Sarcophilus harrisii ENSSHAG00000016542 I 0.744
ENSPFOG00000016934 Poecilia formosa ENSPFOG00000016934 I 0.732
ENSXMAG00000012884 Xiphophorus maculatus ENSXMAG00000012884 I 0.732
PAX3 Oryzias latipes ENSORLG00000009031 I 0.732
GJ23973 Drosophila virilis FBgn0211060 I 0.732
GH10195 Drosophila grimshawi FBgn0117676 I 0.732
GB43794 Apis mellifera GB43794 I 0.732
PAX7 Ochotona princeps ENSOPRG00000007352 I 0.720
DAPPUDRAFT_334067 Daphnia pulex DAPPUDRAFT_334067 I 0.707
HelroG185509 Helobdella robusta HelroG185509 I 0.707
Hsal_08389--XP_394848.3_APIME Harpegnathos saltator Hsal_08389--XP_394848.3_APIME I 0.707