SINV20456 (Solenopsis invicta)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
SINV20456 T237660_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
eyg
M03887_2.00
Drosophila melanogaster
NDTAATCGATTAHN

NDTAATCGATTAHN
SELEX
Nitta et al.(2015)
eyg_1
0.912 0.912
toe
M03902_2.00
Drosophila melanogaster
NTAATYGATTAN

NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_1
0.856 0.856
toe
M03903_2.00
Drosophila melanogaster
NTAATYGATTAN

NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_2
0.856 0.856
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.720 0.720
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.720 0.720
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.720 0.720
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.720 0.720
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.720 0.720
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.720 0.720
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.720 0.720
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.720 0.720
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.720 0.720
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.720 0.720
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.720 0.720
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.720 0.720
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.720 0.720
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.720 0.720
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.712 0.712
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.712 0.712
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.712 0.712
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.712 0.712
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.712 0.712
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.712 0.712
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SINV20456-PA Paired box 1 69
SINV20456-PA Homeodomain 201 257

Links

Other Homeodomain,Paired box family TFs
Other Solenopsis invicta TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB000828 Anopheles albimanus AALB000828 N 0.000
AATE015541 Anopheles atroparvus AATE015541 N 0.000
ACHR006139 Anopheles christyi ACHR006139 N 0.000
ACOM026850 Anopheles coluzzii ACOM026850 N 0.000
ADAC009779 Anopheles darlingi ADAC009779 N 0.000
ADIR005150 Anopheles dirus ADIR005150 N 0.000
AFAF000174 Anopheles farauti AFAF000174 N 0.000
AFUN008391 Anopheles funestus AFUN008391 N 0.000
AGAP009806 Anopheles gambiae AGAP009806 N 0.000
AMAM022159 Anopheles maculatus AMAM022159 N 0.000
AMEC017406 Anopheles melas AMEC017406 N 0.000
AMEM010054 Anopheles merus AMEM010054 N 0.000
AMIN009538 Anopheles minimus AMIN009538 N 0.000
Cflo_07498--XP_394429.3_APIME Camponotus floridanus Cflo_07498--XP_394429.3_APIME N 0.000
GB55837 Apis mellifera GB55837 N 0.000
GD21641 Drosophila simulans FBgn0193065 N 0.000
GI17432 Drosophila mojavensis FBgn0140176 N 0.000
GJ18379 Drosophila virilis FBgn0205538 N 0.000
Hsal_06758--XP_394429.3_APIME Harpegnathos saltator Hsal_06758--XP_394429.3_APIME N 0.000
NV11070 Nasonia vitripennis NV11070 N 0.000