Alligator_sinensis_CCG000926.1 (Alligator sinensis)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		Alligator_sinensis_CCG000926.1 T237691_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX4
M00350_2.00 		Homo sapiens
NNNATTAN
NTAATNNN		 PBM
Barrera et al.(2016)
PAX4_REF 		0.732 0.732
PAX4
M00351_2.00 		Homo sapiens
NNNATTAN
NTAATNNN		 PBM
Barrera et al.(2016)
PAX4_REF_R3 		0.732 0.732
PAX4
M03295_2.00 		Homo sapiens
HKAATTAR
YTAATTMD		 SELEX
Jolma et al.(2013)
PAX4_1 		0.732 0.732
PAX4
M03296_2.00 		Homo sapiens
YKAATTAV
BTAATTMR		 SELEX
Jolma et al.(2013)
PAX4_2 		0.732 0.732
PAX4
M03883_2.00 		Homo sapiens
SGTCACGCWTSRNTG
CANYSAWGCGTGACS		 SELEX
Nitta et al.(2015)
PAX4_1 		0.732 0.732
PAX4
M03884_2.00 		Homo sapiens
NNAATTANYKAATDMV
BKHATTMRNTAATTNN		 SELEX
Nitta et al.(2015)
PAX4_2 		0.732 0.732
PAX4
M05430_2.00 		Homo sapiens
NAATTANNNNNNVNTAATTN
NAATTANBNNNNNNTAATTN		 SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1 		0.732 0.732
PAX4
M05431_2.00 		Homo sapiens
NRYTWYACGCWTSRNYRNNYV
BRNNYRNYSAWGCGTRWARYN		 SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2 		0.732 0.732
PAX4
M05432_2.00 		Homo sapiens
NTYACGCWYSRNYKMVYN
NRBKMRNYSRWGCGTRAN		 SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3 		0.732 0.732
PAX4
M05433_2.00 		Homo sapiens
WHACGSTMATTDR
YHAATKASCGTDW		 SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4 		0.732 0.732
PAX4
M10811_2.00 		Homo sapiens
NVNBSNNYVCGCHTSAMBNCN
NGNVKTSADGCGBRNNSVNBN		 Transfac
Matys et al.(2006)
V$PAX4_01 		0.732 0.732
PAX4
M10812_2.00 		Homo sapiens
NAHWAATTDVV
BBHAATTWDTN		 Transfac
Matys et al.(2006)
V$PAX4_02 		0.732 0.732
PAX4
M10813_2.00 		Homo sapiens
NDNNHYCACCCB
VGGGTGRDNNHN		 Transfac
Matys et al.(2006)
V$PAX4_03 		0.732 0.732
PAX4
M10814_2.00 		Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB
VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY		 Transfac
Matys et al.(2006)
V$PAX4_04 		0.732 0.732
PAX4
M10815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX4_Q2 		0.732 0.732
PAX4
M05434_2.00 		Homo sapiens
NHATTANBTAATDN
NHATTAVNTAATDN		 SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1 		0.732 0.732
PAX4
M05435_2.00 		Homo sapiens
VATTWYACGCWTSRNYDVNYN
NRNBHRNYSAWGCGTRWAATB		 SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2 		0.732 0.732
PAX4
M05436_2.00 		Homo sapiens
HTYACGCWTSANYGMNYN
NRNKCRNTSAWGCGTRAD		 SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3 		0.732 0.732
PAX4
M05437_2.00 		Homo sapiens
DHRYGCTAATTAN
NTAATTAGCRYDH		 SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4 		0.732 0.732
PAX4
M00347_2.00 		Homo sapiens
NNNATND
HNATNNN		 PBM
Barrera et al.(2016)
PAX4_R183C 		0.724 0.724
PAX4
M00348_2.00 		Homo sapiens
NNDATTAN
NTAATHNN		 PBM
Barrera et al.(2016)
PAX4_R192H 		0.724 0.724
PAX4
M00349_2.00 		Homo sapiens
NNNATTANN
NNTAATNNN		 PBM
Barrera et al.(2016)
PAX4_R192S 		0.724 0.724
Pax4
M00542_2.00 		Mus musculus
NNNATTAN
NTAATNNN		 PBM
Berger et al.(2008)
Pax4_3989 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG000926.1 Paired box 6 93
Alligator_sinensis_CCG000926.1 Homeodomain 114 154

Links

Other Homeodomain,Paired box family TFs
Other Alligator sinensis TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10003254 Chelonia mydas Cmyd_10003254 N 0.772
Afo_R008534 Aptenodytes forsteri Afo_R008534 I 0.772
PAX4 Sorex araneus ENSSARG00000004842 I 0.740
PAX4 Equus caballus ENSECAG00000008343 I 0.732
ENSPPYG00000017971 Pongo abelii ENSPPYG00000017971 I 0.732
PAX4 Pan troglodytes ENSPTRG00000019653 I 0.732
PAX4 Cavia porcellus ENSCPOG00000006244 I 0.732
PAX4 Homo sapiens ENSG00000106331 D 0.732
ENSAMEG00000004648 Ailuropoda melanoleuca ENSAMEG00000004648 I 0.724
PAX4 Otolemur garnettii ENSOGAG00000013348 I 0.724
PAX4 Macaca mulatta ENSMMUG00000015429 I 0.724
PAX4 Oryctolagus cuniculus ENSOCUG00000001612 I 0.724
PAX4 Microcebus murinus ENSMICG00000000095 I 0.724
ENSCSAG00000010195 Chlorocebus sabaeus ENSCSAG00000010195 I 0.724
PAX4 Callithrix jacchus ENSCJAG00000017652 I 0.724
PAX4 Canis familiaris ENSCAFG00000001719 I 0.724
ENSP00000368014 Macaca fascicularis ENSP00000368014 I 0.724
Myotis_brandtii_Pax4_10010526 Myotis brandtii Myotis_brandtii_Pax4_10010526 I 0.724
PAX4 Sus scrofa ENSSSCG00000016591 I 0.724
PAX4 Gorilla gorilla ENSGGOG00000002555 I 0.724
PAX4 Felis catus ENSFCAG00000005485 I 0.724
ENSSTOG00000002127 Ictidomys tridecemlineatus ENSSTOG00000002127 I 0.717
PAX4 Tursiops truncatus ENSTTRG00000006056 I 0.717
ENSBTAP00000042667-D1 Bos grunniens ENSBTAP00000042667-D1 I 0.717
ENSNLEG00000012257 Nomascus leucogenys ENSNLEG00000012257 I 0.717
PAX4 Erinaceus europaeus ENSEEUG00000009616 I 0.717
ENSMPUG00000006575 Mustela putorius furo ENSMPUG00000006575 I 0.717
Pax4 Mus musculus ENSMUSG00000029706 D 0.717
ENSOARG00000001951 Ovis aries ENSOARG00000001951 I 0.717
Pax4 Dipodomys ordii ENSDORG00000000332 I 0.709
PAX4 Pteropus vampyrus ENSPVAG00000013944 I 0.709
ENSSHAG00000015143 Sarcophilus harrisii ENSSHAG00000015143 I 0.709