Gfo_R002455 (Geospiza fortis)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		Gfo_R002455 T237711_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX2
M03294_2.00 		Homo sapiens
SGTCACGCWTSRNTGVNY
RNBCANYSAWGCGTGACS		 SELEX
Jolma et al.(2013)
PAX2_1 		0.987 0.987
PAX2
M05428_2.00 		Homo sapiens
NSGYYACGCNYSRNYRVNBN
NVNBYRNYSRNGCGTRRCSN		 SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX 		0.987 0.987
PAX2
M10808_2.00 		Homo sapiens
NNHNRTYAHKBRHDMBBNN
NNVVKHDYVMDWRAYNDNN		 Transfac
Matys et al.(2006)
V$PAX2_01 		0.987 0.987
PAX2
M10809_2.00 		Homo sapiens
NDSTTTNNN
NNNAAASHN		 Transfac
Matys et al.(2006)
V$PAX2_02 		0.987 0.987
PAX2
M10810_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX2_Q2 		0.987 0.987
PAX2
M05429_2.00 		Homo sapiens
NSGTCACGCWTSANYGVNYN
NRNBCRNTSAWGCGTGACSN		 SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX 		0.987 0.987
Pax2
M02690_2.00 		Mus musculus
NRTCAYKB
VMRTGAYN		 SELEX
Mathelier et al.(2014)
MA0067.1 		0.981 0.981
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.718 0.718
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.718 0.718
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.718 0.718
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.718 0.718
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.718 0.718
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.718 0.718
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.718 0.718
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.718 0.718
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.718 0.718
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.718 0.718
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.718 0.718
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.718 0.718
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.718 0.718
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.718 0.718
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.718 0.718
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.712 0.712
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.712 0.712
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.712 0.712
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.712 0.712
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.712 0.712
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002455 Paired box 1 125
Gfo_R002455 Homeodomain 236 266

Links

Other Homeodomain,Paired box family TFs
Other Geospiza fortis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PAX2 Taeniopygia guttata ENSTGUG00000007620 I 1.000
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.994
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.994
ENSFALG00000007308 Ficedula albicollis ENSFALG00000007308 I 0.994
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.994
PAX2 Procavia capensis ENSPCAG00000006623 I 0.987
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 0.987
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.987
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 0.987
PAX2 Pan troglodytes ENSPTRG00000002853 I 0.987
PAX2 Microcebus murinus ENSMICG00000001357 I 0.987
PAX2 Ochotona princeps ENSOPRG00000007096 I 0.987
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 0.987
Pax2 Mus musculus ENSMUSG00000004231 D 0.987
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 0.987
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 0.987
PAX2 Macaca mulatta ENSMMUG00000009163 I 0.987
PAX2 Gorilla gorilla ENSGGOG00000014908 I 0.987
PAX2 Homo sapiens ENSG00000075891 D 0.987
PAX2 Cavia porcellus ENSCPOG00000000939 I 0.987
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 0.987
PAX2 Callithrix jacchus ENSCJAG00000017397 I 0.987
PAX2 Canis familiaris ENSCAFG00000009709 I 0.987
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 0.987
PAX2 Bos taurus ENSBTAG00000021566 I 0.987
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 0.987
PAX2 Tursiops truncatus ENSTTRG00000015106 I 0.987
PAX2 Felis catus ENSFCAG00000011602 I 0.987
PAX2 Otolemur garnettii ENSOGAG00000015274 I 0.987
PAX2 Sus scrofa ENSSSCG00000010556 I 0.987
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 0.987
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 0.987
PAX2 Equus caballus ENSECAG00000021123 I 0.987
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.981
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 0.981
pax2.L Xenopus laevis XB-GENE-486805 I 0.974
Pax2 Dipodomys ordii ENSDORG00000006193 I 0.974
PAX2 Echinops telfairi ENSETEG00000014765 I 0.968
ENSSTOG00000011575 Ictidomys tridecemlineatus ENSSTOG00000011575 I 0.968
ENSCSAG00000005568 Chlorocebus sabaeus ENSCSAG00000005568 I 0.968
PAX2 Myotis lucifugus ENSMLUG00000015106 I 0.968
CAA71206 Xenopus laevis CAA71206 I 0.968
Pvit_13858 Pogona vitticeps Pvit_13858 I 0.955
CAA04222 Xenopus laevis CAA04222 I 0.942
ENSLACG00000017470 Latimeria chalumnae ENSLACG00000017470 I 0.938
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.917
ENSAPLG00000014579 Anas platyrhynchos ENSAPLG00000014579 I 0.891
Sakowv30045649m.g Saccoglossus kowalevskii Sakowv30045649m.g I 0.814
fgenesh2_kg.scaffold_131000004 Branchiostoma floridae fgenesh2_kg.scaffold_131000004 I 0.772
ENSOARG00000015552 Ovis aries ENSOARG00000015552 I 0.762
pax6a Danio rerio ENSDARG00000103379 I 0.724
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.724
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.718
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.718
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.718
pax6b Danio rerio ENSDARG00000045936 I 0.718
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.718
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.718
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.718
pax6.S Xenopus laevis XB-GENE-6464331 I 0.718
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.712
AALB006643 Anopheles albimanus AALB006643 I 0.705