Gfo_R002455 (Geospiza fortis)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Gfo_R002455 T237711_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY

RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
0.987 0.987
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN

NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
0.987 0.987
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN

NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
0.987 0.987
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN

NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
0.987 0.987
PAX2
M10810_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
0.987 0.987
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN

NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
0.987 0.987
Pax2
M02690_2.00
Mus musculus
NRTCAYKB

VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.981 0.981
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.718 0.718
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.718 0.718
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.718 0.718
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.718 0.718
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.718 0.718
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.718 0.718
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.718 0.718
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.718 0.718
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.718 0.718
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.718 0.718
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.718 0.718
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.718 0.718
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.718 0.718
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.718 0.718
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.718 0.718
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.712 0.712
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.712 0.712
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.712 0.712
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.712 0.712
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.712 0.712
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002455 Paired box 1 125
Gfo_R002455 Homeodomain 236 266

Links

Other Homeodomain,Paired box family TFs
Other Geospiza fortis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PAX2 Homo sapiens ENSG00000075891 D 0.987
Pax2 Mus musculus ENSMUSG00000004231 D 0.987
PAX2 Sus scrofa ENSSSCG00000010556 I 0.987
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.994
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.981
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 0.987
PAX2 Pan troglodytes ENSPTRG00000002853 I 0.987
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 0.987
PAX2 Procavia capensis ENSPCAG00000006623 I 0.987
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 0.987
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.718
PAX2 Ochotona princeps ENSOPRG00000007096 I 0.987
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.724
PAX2 Otolemur garnettii ENSOGAG00000015274 I 0.987
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 0.987
AALB006643 Anopheles albimanus AALB006643 I 0.705
ENSSTOG00000011575 Ictidomys tridecemlineatus ENSSTOG00000011575 I 0.968
pax6.S Xenopus laevis XB-GENE-6464331 I 0.718
pax2.L Xenopus laevis XB-GENE-486805 I 0.974
CAA71206 Xenopus laevis CAA71206 I 0.968
CAA04222 Xenopus laevis CAA04222 I 0.942
Sakowv30045649m.g Saccoglossus kowalevskii Sakowv30045649m.g I 0.814
fgenesh2_kg.scaffold_131000004 Branchiostoma floridae fgenesh2_kg.scaffold_131000004 I 0.772
Pvit_13858 Pogona vitticeps Pvit_13858 I 0.955
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 0.987
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 0.987
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 0.987
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.718
PAX2 Tursiops truncatus ENSTTRG00000015106 I 0.987
PAX2 Taeniopygia guttata ENSTGUG00000007620 I 1.000
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.718
ENSOARG00000015552 Ovis aries ENSOARG00000015552 I 0.762
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.917
PAX2 Echinops telfairi ENSETEG00000014765 I 0.968
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 0.987
PAX2 Equus caballus ENSECAG00000021123 I 0.987
Pax2 Dipodomys ordii ENSDORG00000006193 I 0.974
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 0.987
pax6a Danio rerio ENSDARG00000103379 I 0.724
pax6b Danio rerio ENSDARG00000045936 I 0.718
ENSCSAG00000005568 Chlorocebus sabaeus ENSCSAG00000005568 I 0.968
PAX2 Cavia porcellus ENSCPOG00000000939 I 0.987
PAX2 Callithrix jacchus ENSCJAG00000017397 I 0.987
PAX2 Canis familiaris ENSCAFG00000009709 I 0.987
PAX2 Bos taurus ENSBTAG00000021566 I 0.987
ENSAPLG00000014579 Anas platyrhynchos ENSAPLG00000014579 I 0.891
ENSFALG00000007308 Ficedula albicollis ENSFALG00000007308 I 0.994
PAX2 Felis catus ENSFCAG00000011602 I 0.987
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 0.981
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.994
PAX2 Macaca mulatta ENSMMUG00000009163 I 0.987
PAX2 Myotis lucifugus ENSMLUG00000015106 I 0.968
PAX2 Microcebus murinus ENSMICG00000001357 I 0.987
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.994
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.718
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.987
ENSLACG00000017470 Latimeria chalumnae ENSLACG00000017470 I 0.938
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.718
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.718
PAX2 Gorilla gorilla ENSGGOG00000014908 I 0.987
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.712
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 0.987