Myotis_brandtii_Pax4_10010526 (Myotis brandtii)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Myotis_brandtii_Pax4_10010526 T237721_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.940 0.940
PAX4
M00351_2.00
Homo sapiens
NNNATTAN

NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.940 0.940
Pax4
M00542_2.00
Mus musculus
NNNATTAN

NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.940 0.940
PAX4
M03295_2.00
Homo sapiens
HKAATTAR

YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.940 0.940
PAX4
M03296_2.00
Homo sapiens
YKAATTAV

BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.940 0.940
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG

CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.940 0.940
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV

BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.940 0.940
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN

NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.940 0.940
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV

BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.940 0.940
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN

NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.940 0.940
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR

YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.940 0.940
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN

NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.940 0.940
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV

BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.940 0.940
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB

VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.940 0.940
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB

VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.940 0.940
PAX4
M10815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.940 0.940
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN

NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.940 0.940
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN

NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.940 0.940
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN

NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.940 0.940
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN

NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.940 0.940
PAX4
M00347_2.00
Homo sapiens
NNNATND

HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.934 0.934
PAX4
M00348_2.00
Homo sapiens
NNDATTAN

NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.934 0.934
PAX4
M00349_2.00
Homo sapiens
NNNATTANN

NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.934 0.934
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_Pax4_10010526 Paired box 22 146
Myotis_brandtii_Pax4_10010526 Homeodomain 183 239

Links

Other Homeodomain,Paired box family TFs
Other Myotis brandtii TFs

Invalid Input OrderBy

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action