fgenesh2_kg.scaffold_131000004 (Branchiostoma floridae)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
fgenesh2_kg.scaffold_131000004 T237730_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY

RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
0.772 0.772
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN

NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
0.772 0.772
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN

NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
0.772 0.772
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN

NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
0.772 0.772
PAX2
M10810_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
0.772 0.772
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN

NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
0.772 0.772
Pax2
M02690_2.00
Mus musculus
NRTCAYKB

VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.scaffold_131000004 Paired box 22 146
fgenesh2_kg.scaffold_131000004 Homeodomain 248 294

Links

Other Homeodomain,Paired box family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action