fgenesh2_pg.scaffold_23000118 (Branchiostoma floridae)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
fgenesh2_pg.scaffold_23000118 T237734_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.812 0.812
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.812 0.812
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.812 0.812
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.812 0.812
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.812 0.812
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.812 0.812
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.812 0.812
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.812 0.812
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.812 0.812
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.812 0.812
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.812 0.812
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.812 0.812
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.812 0.812
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.812 0.812
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.806 0.806
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.806 0.806
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.806 0.806
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.806 0.806
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.806 0.806
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.806 0.806
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.806 0.806
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.743 0.743
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.743 0.743
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.743 0.743
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.722 0.722
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.722 0.722
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_23000118 Paired box 295 381
fgenesh2_pg.scaffold_23000118 Homeodomain 749 805

Links

Other Homeodomain,Paired box family TFs
Other Branchiostoma floridae TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI008177 Acyrthosiphon pisum ACYPI008177 I 0.729
AAEL002321 Aedes aegypti AAEL002321 I 0.708
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.812
ENSAPLG00000004928 Anas platyrhynchos ENSAPLG00000004928 I 0.799
ACUA021227 Anopheles culicifacies ACUA021227 I 0.715
Afo_R014630 Aptenodytes forsteri Afo_R014630 I 0.797
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.806
fgenesh2_pg.scaffold_199000043 Branchiostoma floridae fgenesh2_pg.scaffold_199000043 I 0.840
Aan_R006618 Calypte anna Aan_R006618 I 0.799
ENSCING00000006503 Ciona intestinalis ENSCING00000006503 I 0.771
pax6b Danio rerio ENSDARG00000045936 I 0.812
pax6a Danio rerio ENSDARG00000103379 I 0.812
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.743
GF21877 Drosophila ananassae FBgn0098877 I 0.722
GG16399 Drosophila erecta FBgn0108631 I 0.743
GG16402 Drosophila erecta FBgn0108634 I 0.722
toy Drosophila melanogaster FBgn0019650 D 0.722
ey Drosophila melanogaster FBgn0005558 D 0.743
ey Drosophila sechellia FBgn0068720 I 0.743
GM13021 Drosophila sechellia FBgn0167952 I 0.722
ey Drosophila virilis FBgn0028754 I 0.743
GE14563 Drosophila yakuba FBgn0232162 I 0.722
GE14559 Drosophila yakuba FBgn0232158 I 0.743
ENSFALG00000010839 Ficedula albicollis ENSFALG00000010839 I 0.799
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.812
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.778
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.826
Gfo_R001537 Geospiza fortis Gfo_R001537 I 0.799
PAX6 Homo sapiens ENSG00000007372 D 0.812
ISCW021772 Ixodes scapularis ISCW021772 I 0.750
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.812
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.812
PAX6 Monodelphis domestica ENSMODG00000009611 I 0.806
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.729
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.792
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.826
PAX6 Ornithorhynchus anatinus ENSOANG00000015149 I 0.799
pax6b Oryzias latipes ENSORLG00000009913 I 0.826
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.792
PAX6 Pan troglodytes ENSPTRG00000003474 I 0.757
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.826
RSKR_0000862000 Rhabditophanes kr3021 RSKR_0000862000 I 0.701
Sakowv30026828m.g Saccoglossus kowalevskii Sakowv30026828m.g I 0.771
SMAR013763 Strigamia maritima SMAR013763 I 0.764
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.819
ENSTSYG00000011965 Tarsius syrichta ENSTSYG00000011965 I 0.797
tetur09g00660 Tetranychus urticae tetur09g00660 I 0.708
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.778
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.819
TC008176 Tribolium castaneum TC008176 I 0.750
TC007409 Tribolium castaneum TC007409 I 0.750
TTRE_0000173501 Trichuris trichiura TTRE_0000173501 I 0.715
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.812
pax6.S Xenopus laevis XB-GENE-6464331 I 0.799
pax6.L Xenopus laevis XB-GENE-865046 I 0.806
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.826
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.792
L798_00712 Zootermopsis nevadensis L798_00712 I 0.750