TF Information

L596_g12356 *(Steinernema carpocapsae)* Homeodomain,Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox) PF00292 (PAX)	IPR001356 IPR001523	L596_g12356	T237855_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NEMVEDRAFT_v1g136480 M02147_2.00	Nematostella vectensis	NNNNNNNNNN	NNNNNNNNNN	PBM Weirauch et al.(2014) pTH6103	0.625	0.544
PAX6 M00342_2.00	Homo sapiens	NNNRCDMATTANNN	NNNTAATKHGYNNN	PBM Barrera et al.(2016) PAX6_REF	0.863	0.863
Pax5B M01301_2.00	Gallus gallus	NSNDTNNNN	NNNNAHNSN	PBM Lambert et al.(2019) pTH9781	0.736	0.736
PAX5 M03443_2.00	Homo sapiens	RNBYANYSAWSCGTRACN	NGTYACGSWTSRNTRVNY	SELEX Jolma et al.(2013) PAX5_1	0.736	0.736
Pax6 M00540_2.00	Mus musculus	CBAATTAA	TTAATTVG	PBM Berger et al.(2008) Pax6_3838	0.863	0.863
PAX5 M08160_2.00	Homo sapiens	RDGCGTGACCNN	NNGGTCACGCHY	ChIP-seq Mathelier et al.(2014) MA0014.3	0.736	0.736
PAX6 M03291_2.00	Homo sapiens	DTWYACGCWTGANTGMDYH	DRHKCANTCAWGCGTRWAH	SELEX Jolma et al.(2013) PAX6_1	0.863	0.863
PAX5 M07995_2.00	Homo sapiens	BCAVYSRDSCRKRRC	GYYMYGSHYSRBTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5C20_HudsonAlpha	0.736	0.736
PAX6 M05412_2.00	Homo sapiens	NYACGCHYSRNYRMNYN	NRNKYRNYSRDGCGTRN	SELEX Yin et al.(2017) PAX6_eDBD_HT-SELEX	0.863	0.863
PAX6 M05414_2.00	Homo sapiens	NYRCGCNYSRNYRVNYN	NRNBYRNYSRNGCGYRN	SELEX Yin et al.(2017) PAX6_FL_HT-SELEX	0.863	0.863
PAX5 M07996_2.00	Homo sapiens	BCASYSRDSCRTRAC	GTYAYGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5N19_HudsonAlpha	0.736	0.736
PAX6 M02689_2.00	Homo sapiens	TTYACGCWTSANTK	MANTSAWGCGTRAA	SELEX Mathelier et al.(2014) MA0069.1	0.863	0.863
PAX5 M07997_2.00	Homo sapiens	CASYSRDSCRKRACN	NGTYMYGSHYSRSTG	ChIP-seq Gerstein et al.(2012) GM12891_PAX5C20_HudsonAlpha	0.736	0.736
PAX6 M09216_2.00	Homo sapiens	TYMYRCWTSRNT	ANYSAWGYRKRA	Misc Kulakovskiy et al.(2013) PAX6_HUMAN.H11MO.0.C	0.863	0.863
PAX5 M07998_2.00	Homo sapiens	BCASYSRDSCGKRRC	GYYMCGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12892_PAX5C20_HudsonAlpha	0.736	0.736
Pax6 M09217_2.00	Mus musculus	TYMYRCWTSRNT	ANYSAWGYRKRA	Misc Kulakovskiy et al.(2013) PAX6_MOUSE.H11MO.0.C	0.863	0.863
PAX5 M08227_2.00	Homo sapiens	BCANYSRDGCGTRAM	KTYACGCHYSRNTGV	ChIP-seq Contrino et al.(2012) Mv108	0.736	0.736
PAX6 M10806_2.00	Homo sapiens	NHNNTTYACGCWTSANTKVHH	DDBMANTSAWGCGTRAANNDN	Transfac Matys et al.(2006) V$PAX6_01	0.863	0.863
PAX5 M08228_2.00	Homo sapiens	AGCGTGRCYG	CRGYCACGCT	ChIP-seq Contrino et al.(2012) Mv109	0.736	0.736
PAX5 M09341_2.00	Homo sapiens	SNVDGNKCARCVRAGCRDGAC	GTCHYGCTYBGYTGMNCHBNS	Misc Kulakovskiy et al.(2013) PAX5_HUMAN.H11MO.0.A	0.736	0.736
PAX6 M10807_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX6_Q2	0.863	0.863
Pax5 M09342_2.00	Mus musculus	VDRNBCAVYVRDSCRKRRM	KYYMYGSHYBRBTGVNYHB	Misc Kulakovskiy et al.(2013) PAX5_MOUSE.H11MO.0.A	0.736	0.736
PAX6 M05413_2.00	Homo sapiens	DYRCGCWTSRNYRMNYN	NRNKYRNYSAWGCGYRH	SELEX Yin et al.(2017) PAX6_eDBD_Methyl-HT-SELEX	0.863	0.863
PAX5 M09622_2.00	Homo sapiens	BCASYSRDSCRTGRMN	NKYCAYGSHYSRSTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_1	0.736	0.736
PAX6 M05415_2.00	Homo sapiens	NYACGCHYSRNYRMHYN	NRDKYRNYSRDGCGTRN	SELEX Yin et al.(2017) PAX6_FL_Methyl-HT-SELEX	0.863	0.863
PAX6 M00335_2.00	Homo sapiens	BRNNNNNN	NNNNNNYV	PBM Barrera et al.(2016) PAX6_A79E	0.857	0.857
PAX5 M09623_2.00	Homo sapiens	BCABNVRSCGTGAC	GTCACGSYBNVTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_2	0.736	0.736
PAX6 M00336_2.00	Homo sapiens	RTGCACAC	GTGTGCAY	PBM Barrera et al.(2016) PAX6_F258S	0.857	0.857
PAX5 M11208_2.00	Homo sapiens	BCNNNRNKCANBGNWGNRKRGMSRSHNB	VNDSYSKCYMYNCWNCVNTGMNYNNNGV	Transfac Matys et al.(2006) V$PAX5_01	0.736	0.736
PAX6 M00337_2.00	Homo sapiens	NMTAATTANNN	NNNTAATTAKN	PBM Barrera et al.(2016) PAX6_P118R	0.857	0.857
PAX5 M11209_2.00	Homo sapiens	VRHVDGDNDBBTNRAGCGKRACVRYNVH	DBNRYBGTYMCGCTYNAVVHNHCHBDYB	Transfac Matys et al.(2006) V$PAX5_02	0.736	0.736
PAX6 M00338_2.00	Homo sapiens	WSGVRVDR	YHBYBCSW	PBM Barrera et al.(2016) PAX6_P68S	0.857	0.857
PAX5 M11210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_06	0.736	0.736
PAX6 M00339_2.00	Homo sapiens	NNNNSGKVGGHNN	NNDCCBMCSNNNN	PBM Barrera et al.(2016) PAX6_R128C	0.857	0.857
PAX5 M11211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_07	0.736	0.736
PAX5 M11212_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_Q6	0.736	0.736
PAX6 M00340_2.00	Homo sapiens	NNNNNRN	NYNNNNN	PBM Barrera et al.(2016) PAX6_R242T	0.857	0.857
PAX8 M05685_2.00	Homo sapiens	NRNBYRNYSRWGCGTGACSN	NSGTCACGCWYSRNYRVNYN	SELEX Yin et al.(2017) PAX8_FL_HT-SELEX	0.728	0.728
PAX6 M00341_2.00	Homo sapiens	BTSCCCSGSC	GSCSGGGSAV	PBM Barrera et al.(2016) PAX6_R26G	0.857	0.857
Pax8 M09624_2.00	Rattus norvegicus	BCAGBCADSCRKGVM	KBCMYGSHTGVCTGV	Misc Heinz et al.(2010) Thyroid-Pax8_GSE26938	0.728	0.728
PAX6 M00343_2.00	Homo sapiens	NNNNCCCVKCNBN	NVNGMBGGGNNNN	PBM Barrera et al.(2016) PAX6_S119R	0.857	0.857
PAX6 M00344_2.00	Homo sapiens	NNMSASGBYNNN	NNNRVCSTSKNN	PBM Barrera et al.(2016) PAX6_V126D	0.857	0.857
PAX8 M11205_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_01	0.728	0.728
ey M03896_2.00	Drosophila melanogaster	CKAATTAD	HTAATTMG	SELEX Nitta et al.(2015) ey_1	0.852	0.852
PAX8 M11206_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_B	0.728	0.728
ey M03897_2.00	Drosophila melanogaster	HTAATCKMATTAD	HTAATKMGATTAD	SELEX Nitta et al.(2015) ey_2	0.852	0.852
PAX8 M05686_2.00	Homo sapiens	NRNBCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGVNYN	SELEX Yin et al.(2017) PAX8_FL_Methyl-HT-SELEX	0.728	0.728
ey M03898_2.00	Drosophila melanogaster	WAAYYRRTTN	NAAYYRRTTW	SELEX Nitta et al.(2015) ey_3	0.852	0.852
pax2b M02425_2.00	Danio rerio	HVNYSRNSCR	YGSNYSRNBD	PBM Weirauch et al.(2014) pTH8679	0.720	0.720
toy M03899_2.00	Drosophila melanogaster	TTYACGCWTGASTGMACAN	NTGTKCASTCAWGCGTRAA	SELEX Nitta et al.(2015) toy_1	0.852	0.852
pax2 M02428_2.00	Xenopus tropicalis	NNNRNBCRNN	NNYGVNYNNN	PBM Weirauch et al.(2014) pTH8556	0.720	0.720
sv M01302_2.00	Drosophila melanogaster	NNNSCRBRDM	KHYVYGSNNN	PBM Lambert et al.(2019) pTH9773	0.704	0.704
toy M03900_2.00	Drosophila melanogaster	NTYACGCWTSAVTGMRCNN	NNGYKCABTSAWGCGTRAN	SELEX Nitta et al.(2015) toy_2	0.852	0.852
sv M03949_2.00	Drosophila melanogaster	NBCRNYSAWGCGTGACS	SGTCACGCWTSRNYGVN	SELEX Nitta et al.(2015) sv_1	0.704	0.704
toy M03901_2.00	Drosophila melanogaster	VATTANBHAYGSWYSRN	NYSRWSCRTDVNTAATB	SELEX Nitta et al.(2015) toy_3	0.852	0.852
sv M06438_2.00	Drosophila melanogaster	RNYSRDSCGTRACNN	NNGTYACGSHYSRNY	B1H Zhu et al.(2011) sv_SOLEXA_5_FBgn0005561	0.704	0.704
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
L596_g12356.t1	Homeodomain	50	106	QRNRTSFSQEQIENLEKEFERTHYPDVFARERLASKIGLPEARIQVWFSNRRAKWRR
L596_g12356.t2	Paired box	7	131	GHTGVNQLGGVFVNGRPLPDATRQKIVDLAHQGARPCDISRILQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATNSVCEKIEAYKREQPSIFAWEIRDKLLGEKVCSQDTIPSVSSINRVLR
L596_g12356.t2	Homeodomain	215	271	QRNRTSFSQEQIENLEKEFERTHYPDVFARERLASKIGLPEARIQVWFSNRRAKWRR
L596_g12356.t3	Paired box	7	131	GHTGVNQLGGVFVNGRPLPDATRQKIVDLAHQGARPCDISRILQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATNSVCEKIEAYKREQPSIFAWEIRDKLLGEKVCSQDTIPSVSSINRVLR

Links
Other Homeodomain,Paired box family TFs
Other *Steinernema carpocapsae* TFs

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608 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

L596_g12356 (Steinernema carpocapsae) Homeodomain,Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

608 Related TFs

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L596_g12356 **(Steinernema carpocapsae)
Homeodomain,Paired box**