pou2f1b (Danio rerio)
Homeodomain,POU

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSDARG00000007996 T238105_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
POU2F1
M00377_2.00
Homo sapiens
NNTGMAWAWN

NWTWTKCANN
PBM
Berger et al.(2006)
Oct-1
1.000 1.000
Pou2f1
M00803_2.00
Mus musculus
NHATWWNHNN

NNDNWWATDN
PBM
Weirauch et al.(2013)
pTH4325
0.957 0.957
POU2F1
M03308_2.00
Homo sapiens
NDTATGYWAATN

NATTWRCATAHN
SELEX
Jolma et al.(2013)
POU2F1_1
1.000 1.000
POU2F1
M03309_2.00
Homo sapiens
HHTRMATATKCAWN

NWTGMATATKYADD
SELEX
Jolma et al.(2013)
POU2F1_2
1.000 1.000
POU2F1
M09219_2.00
Homo sapiens
RNKBVHATGSAAWYVW

WBRWTTSCATDBVMNY
Misc
Kulakovskiy et al.(2013)
PO2F1_HUMAN.H11MO.0.C
1.000 1.000
POU2F1
M10826_2.00
Homo sapiens
NNVNDTATGCAAATNYNNN

NNNRNATTTGCATAHNBNN
Transfac
Matys et al.(2006)
V$OCT1_01
1.000 1.000
POU2F1
M10827_2.00
Homo sapiens
NNNNTGMATATTCNB

VNGAATATKCANNNN
Transfac
Matys et al.(2006)
V$OCT1_02
1.000 1.000
POU2F1
M10828_2.00
Homo sapiens
NNNRTAATNRNDN

NHNYNATTAYNNN
Transfac
Matys et al.(2006)
V$OCT1_03
1.000 1.000
POU2F1
M10829_2.00
Homo sapiens
DHDNDNNHATGYAWAWNHNWNNW

WNNWNDNWTWTRCATDNNHNHDH
Transfac
Matys et al.(2006)
V$OCT1_04
1.000 1.000
POU2F1
M10830_2.00
Homo sapiens
RRTATGCWAATBMK

MKVATTWGCATAYY
Transfac
Matys et al.(2006)
V$OCT1_05
1.000 1.000
POU2F1
M10831_2.00
Homo sapiens
NRYATSWMAWWNWS

SWNAWTKWSATRYN
Transfac
Matys et al.(2006)
V$OCT1_06
1.000 1.000
POU2F1
M10832_2.00
Homo sapiens
WNTATGBTAATT

AATTAVCATANW
Transfac
Matys et al.(2006)
V$OCT1_07
1.000 1.000
POU2F1
M10833_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OCT1_B
1.000 1.000
POU2F1
M10834_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OCT1_Q5_01
1.000 1.000
POU2F1
M10835_2.00
Homo sapiens
VDVHATGCAAAKNMB

VKNMTTTGCATDBHB
Transfac
Matys et al.(2006)
V$OCT1_Q6
1.000 1.000
POU2F1
M10836_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$POU2F1_Q4_01
1.000 1.000
POU2F1
M10837_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$POU2F1_Q4
1.000 1.000
POU2F1
M10838_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$POU2F1_Q6
1.000 1.000
For this family, TFs with SR scores > 0.993 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000037034 POU 217 287
ENSDARP00000037034 Homeodomain 319 376
ENSDARP00000113936 POU 238 284
ENSDARP00000116250 POU 171 242
ENSDARP00000116250 Homeodomain 270 326
ENSDARP00000117781 POU 217 287
ENSDARP00000117781 Homeodomain 319 376
ENSDARP00000132682 POU 239 309
ENSDARP00000132682 Homeodomain 341 398
ENSDARP00000140470 POU 217 287
ENSDARP00000140470 Homeodomain 321 378

Links

Other Homeodomain,POU family TFs
Other Danio rerio TFs

Invalid Input OrderBy

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action