CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pou3f1
(
Danio rerio
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSDARG00000009823
T238106_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development; cell differentiation; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including forebrain neural rod; hindbrain neural keel; nervous system; neural plate; and presumptive diencephalon. Orthologous to human POU3F1 (POU class 3 homeobox 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000027757
POU
190
261
PSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETD
ENSDARP00000027757
Homeodomain
280
336
RKKRTSIEVGVKGALENHFLKCPKPSAHEITTLAGTLQLEKEVVRVWFCNRRQKEKR
Links
Other
Homeodomain,POU
family TFs
Other
Danio rerio
TFs
0 Related TFs
">No related TF found