CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pou3f3b
(
Danio rerio
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSDARG00000095896
T238119_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pou3f3b
M02237_2.00
Danio rerio
NWWATDHNNN
NNNDHATWWN
PBM
Weirauch et al.(2014)
pTH9256
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.993
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02237_2.00
POU
54
125
PTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEAD
M02237_2.00
Homeodomain
144
200
RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000123893
POU
241
312
PTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEAD
ENSDARP00000123893
Homeodomain
331
387
RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKR
ENSDARP00000124688
POU
241
312
PTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEAD
ENSDARP00000124688
Homeodomain
331
387
RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKR
Links
Other
Homeodomain,POU
family TFs
Other
Danio rerio
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy