CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLOCG00000011317
(
Lepisosteus oculatus
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSLOCG00000011317
T238293_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU6F2
M00363_2.00
Homo sapiens
NTAABNNN
NNNVTTAN
PBM
Barrera et al.(2016)
POU6F2_REF
1.000
1.000
POU6F2
M03303_2.00
Homo sapiens
DVCTMATTAH
DTAATKAGBH
SELEX
Jolma et al.(2013)
POU6F2_1
1.000
1.000
POU6F2
M03304_2.00
Homo sapiens
HTAATKAGCTMATTAD
HTAATKAGCTMATTAD
SELEX
Jolma et al.(2013)
POU6F2_2
1.000
1.000
POU6F2
M03305_2.00
Homo sapiens
NNTAATKAGS
SCTMATTANN
SELEX
Jolma et al.(2013)
POU6F2_3
1.000
1.000
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000013904
POU
454
504
VNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILR
ENSLOCP00000013904
POU
517
561
TIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAE
ENSLOCP00000013904
Homeodomain
583
639
RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN
ENSLOCP00000013913
POU
457
507
VNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILR
ENSLOCP00000013913
POU
520
564
TIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAE
ENSLOCP00000013913
Homeodomain
586
642
RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN
ENSLOCP00000013919
POU
150
221
VNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRFEKLDITPKSAQKIKPVLERWMAEAE
ENSLOCP00000013919
Homeodomain
243
299
RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN
Links
Other
Homeodomain,POU
family TFs
Other
Lepisosteus oculatus
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy