CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pou3f4
(
Rattus norvegicus
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSRNOG00000002784
T238577_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity; double-stranded DNA binding activity; and minor groove of adenine-thymine-rich DNA binding activity. Involved in transcription by RNA polymerase II. Located in nucleus. Human ortholog(s) of this gene implicated in X-linked deafness 2. Orthologous to human POU3F4 (POU class 3 homeobox 4). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU3F4
M00366_2.00
Homo sapiens
NWATKHN
NDMATWN
PBM
Barrera et al.(2016)
POU3F4_REF
1.000
1.000
Pou3f4
M00550_2.00
Mus musculus
NWWATKHNNN
NNNDMATWWN
PBM
Berger et al.(2008)
Pou3f4_3773
1.000
1.000
POU3F4
M03317_2.00
Homo sapiens
TATGCWAAT
ATTWGCATA
SELEX
Jolma et al.(2013)
POU3F4_1
1.000
1.000
POU3F4
M03318_2.00
Homo sapiens
TGMATAAWTHW
WDAWTTATKCA
SELEX
Jolma et al.(2013)
POU3F4_2
1.000
1.000
POU3F4
M05492_2.00
Homo sapiens
NYWYGCATAATB
VATTATGCRWRN
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_1
1.000
1.000
POU3F4
M05493_2.00
Homo sapiens
NTAATGABATGCRN
NYGCATVTCATTAN
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_2
1.000
1.000
POU3F4
M05494_2.00
Homo sapiens
NYGCATWMATTAN
NTAATKWATGCRN
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_3
1.000
1.000
POU3F4
M05495_2.00
Homo sapiens
DHATGYRCRTMD
HKAYGYRCATDH
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_4
1.000
1.000
POU3F4
M05496_2.00
Homo sapiens
DTATGCWAATKRV
BYMATTWGCATAH
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_5
1.000
1.000
POU3F4
M05497_2.00
Homo sapiens
HTAATGAKATGCGH
DCGCATMTCATTAD
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_1
1.000
1.000
POU3F4
M05498_2.00
Homo sapiens
DCGCATAAATTAN
NTAATTTATGCGH
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_2
1.000
1.000
POU3F4
M05499_2.00
Homo sapiens
DTATGCGCATAH
DTATGCGCATAH
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_3
1.000
1.000
POU3F4
M05500_2.00
Homo sapiens
WTATGCWAATKAG
CTMATTWGCATAW
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_4
1.000
1.000
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000003724
POU
189
260
PTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEAD
ENSRNOP00000003724
Homeodomain
279
335
RKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR
Links
Other
Homeodomain,POU
family TFs
Other
Rattus norvegicus
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy