CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pou6f1
(
Rattus norvegicus
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSRNOG00000004595
T238579_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in actin cytoskeleton and nuclear body. Orthologous to human POU6F1 (POU class 6 homeobox 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU6F1
M05349_2.00
Homo sapiens
NATTATGNNNNVSATAATN
NATTATSBNNNNCATAATN
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_1
1.000
1.000
POU6F1
M05350_2.00
Homo sapiens
NTAATKABRTRBNN
NNVYAYVTMATTAN
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_2
1.000
1.000
POU6F1
M05351_2.00
Homo sapiens
DTAATGAKNN
NNMTCATTAH
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_3
1.000
1.000
POU6F1
M05352_2.00
Homo sapiens
TATGCNNNGCATA
TATGCNNNGCATA
SELEX
Yin et al.(2017)
POU6F1_FL_HT-SELEX_4
1.000
1.000
POU6F1
M10746_2.00
Homo sapiens
GCATAAWTTAT
ATAAWTTATGC
Transfac
Matys et al.(2006)
V$POU6F1_01
1.000
1.000
POU6F1
M05353_2.00
Homo sapiens
NTAATGAKATGCRN
NYGCATMTCATTAN
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_1
1.000
1.000
POU6F1
M05354_2.00
Homo sapiens
DTAATGAGVD
HBCTCATTAH
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_2
1.000
1.000
POU6F1
M05355_2.00
Homo sapiens
DTATGHTAATKAKN
NMTMATTADCATAH
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_3
1.000
1.000
POU6F1
M05356_2.00
Homo sapiens
TAATKAKNNNTAATKA
TMATTANNNMTMATTA
SELEX
Yin et al.(2017)
POU6F1_FL_Methyl-HT-SELEX_4
1.000
1.000
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000006095
POU
142
213
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE
ENSRNOP00000006095
Homeodomain
235
291
RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN
Links
Other
Homeodomain,POU
family TFs
Other
Rattus norvegicus
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy