CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pou4f3
(
Rattus norvegicus
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSRNOG00000018842
T238584_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including nervous system development; neuromuscular process controlling balance; and sensory perception of sound. Predicted to be located in cytoplasm and nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 15 and autosomal dominant nonsyndromic deafness 52. Orthologous to human POU4F3 (POU class 4 homeobox 3). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU4F3
M00361_2.00
Homo sapiens
NHATKHAN
NTDMATDN
PBM
Barrera et al.(2016)
POU4F3_REF
1.000
1.000
Pou4f3
M00547_2.00
Mus musculus
NHATDHDN
NHDHATDN
PBM
Berger et al.(2008)
Pou4f3_2791
1.000
1.000
POU4F3
M03302_2.00
Homo sapiens
NNHATHAATWATKCAN
NTGMATWATTDATDNN
SELEX
Jolma et al.(2013)
POU4F3_1
1.000
1.000
POU4F3
M05459_2.00
Homo sapiens
DTDMATWATKHAY
RTDMATWATKHAH
SELEX
Yin et al.(2017)
POU4F3_eDBD_HT-SELEX_1
1.000
1.000
POU4F3
M05460_2.00
Homo sapiens
DTGCATWATKNAB
VTNMATWATGCAH
SELEX
Yin et al.(2017)
POU4F3_eDBD_HT-SELEX_2
1.000
1.000
POU4F3
M05463_2.00
Homo sapiens
RTRMATWATKYAB
VTRMATWATKYAY
SELEX
Yin et al.(2017)
POU4F3_FL_HT-SELEX_1
1.000
1.000
POU4F3
M05464_2.00
Homo sapiens
ATRMATWATKNAY
RTNMATWATKYAT
SELEX
Yin et al.(2017)
POU4F3_FL_HT-SELEX_2
1.000
1.000
POU4F3
M10825_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$POU4F3_Q5
1.000
1.000
POU4F3
M05461_2.00
Homo sapiens
WTRMATWATTDAY
RTHAATWATKYAW
SELEX
Yin et al.(2017)
POU4F3_eDBD_Methyl-HT-SELEX_1
1.000
1.000
POU4F3
M05462_2.00
Homo sapiens
THATGCATDA
THATGCATDA
SELEX
Yin et al.(2017)
POU4F3_eDBD_Methyl-HT-SELEX_2
1.000
1.000
POU4F3
M05465_2.00
Homo sapiens
MTVHATWATKBAN
NTVMATWATDBAK
SELEX
Yin et al.(2017)
POU4F3_FL_Methyl-HT-SELEX_1
1.000
1.000
POU4F3
M05466_2.00
Homo sapiens
DTRMATWATTNAY
RTNAATWATKYAH
SELEX
Yin et al.(2017)
POU4F3_FL_Methyl-HT-SELEX_2
1.000
1.000
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000025465
POU
182
256
SDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAE
ENSRNOP00000025465
Homeodomain
275
331
KRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR
Links
Other
Homeodomain,POU
family TFs
Other
Rattus norvegicus
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000003289
Poecilia formosa
ENSPFOG00000003289
I
1.000
ENSPPYG00000015910
Pongo abelii
ENSPPYG00000015910
I
1.000
ENSPSIG00000016096
Pelodiscus sinensis
ENSPSIG00000016096
I
1.000
POU4F3
Pan troglodytes
ENSPTRG00000017374
I
1.000
ENSPANG00000008306
Papio anubis
ENSPANG00000008306
I
1.000
POU4F3
Otolemur garnettii
ENSOGAG00000026756
I
1.000
ENSNLEG00000009898
Nomascus leucogenys
ENSNLEG00000009898
I
1.000
ENSOARG00000003067
Ovis aries
ENSOARG00000003067
I
1.000
ENSOCUG00000022425
Oryctolagus cuniculus
ENSOCUG00000022425
I
1.000
POU4F3
Pteropus vampyrus
ENSPVAG00000005224
I
1.000
ENSSHAG00000008089
Sarcophilus harrisii
ENSSHAG00000008089
I
1.000
Cmyd_10007016
Chelonia mydas
Cmyd_10007016
I
1.000
ENSP00000230732-D1
Bos grunniens
ENSP00000230732-D1
I
1.000
ENSP00000230732
Macaca fascicularis
ENSP00000230732
I
1.000
Myotis_brandtii_POU4F3_10017427
Myotis brandtii
Myotis_brandtii_POU4F3_10017427
I
1.000
ENSXMAG00000001410
Xiphophorus maculatus
ENSXMAG00000001410
I
1.000
POU4F3
Tursiops truncatus
ENSTTRG00000000937
I
1.000
POU4F3
Sus scrofa
ENSSSCG00000014412
I
1.000
ENSSTOG00000021302
Ictidomys tridecemlineatus
ENSSTOG00000021302
I
1.000
POU4F3
Tupaia belangeri
ENSTBEG00000014805
I
1.000
Pou4f3
Mus musculus
ENSMUSG00000024497
D
1.000
ENSMPUG00000007828
Mustela putorius furo
ENSMPUG00000007828
I
1.000
POU4F3
Dasypus novemcinctus
ENSDNOG00000045606
I
1.000
Pou4f3
Dipodomys ordii
ENSDORG00000002965
I
1.000
POU4F3
Equus caballus
ENSECAG00000018410
I
1.000
POU4F3
Erinaceus europaeus
ENSEEUG00000012660
I
1.000
ENSCSAG00000012256
Chlorocebus sabaeus
ENSCSAG00000012256
I
1.000
POU4F3
Cavia porcellus
ENSCPOG00000025610
I
1.000
POU4F3
Bos taurus
ENSBTAG00000018817
I
1.000
POU4F3
Canis familiaris
ENSCAFG00000006473
I
1.000
POU4F3
Callithrix jacchus
ENSCJAG00000021307
I
1.000
POU4F3
Echinops telfairi
ENSETEG00000006520
I
1.000
POU4F3
Felis catus
ENSFCAG00000030722
I
1.000
ENSMICG00000003274
Microcebus murinus
ENSMICG00000003274
I
1.000
ENSMMUG00000022320
Macaca mulatta
ENSMMUG00000022320
I
1.000
POU4F3
Monodelphis domestica
ENSMODG00000010137
I
1.000
ENSMEUG00000009050
Macropus eugenii
ENSMEUG00000009050
I
1.000
POU4F3
Loxodonta africana
ENSLAFG00000006932
I
1.000
POU4F3
Homo sapiens
ENSG00000091010
D
1.000
POU4F3
Gorilla gorilla
ENSGGOG00000012435
I
1.000
ENSLACG00000008349
Latimeria chalumnae
ENSLACG00000008349
I
1.000
ENSAMEG00000017605
Ailuropoda melanoleuca
ENSAMEG00000017605
I
1.000