CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pou6f1
(
Takifugu rubripes
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
ENSTRUG00000014900
T238676_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSGALG00000002235
M02030_2.00
Gallus gallus
AACCGGTTA
TAACCGGTT
PBM
Weirauch et al.(2014)
pTH8565
0.892
0.892
TFCP2L1
M04885_2.00
Homo sapiens
DCYRGHHNNNDCYRGH
DCYRGHNNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX
0.771
0.771
UBP1
M04893_2.00
Homo sapiens
NDCYRGHNNNNDCYRGHN
NDCYRGHNNNNDCYRGHN
SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX
0.843
0.843
TFCP2L1
M10609_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP9_01
0.771
0.771
UBP1
M10614_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6_01
0.843
0.843
UBP1
M10615_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6
0.831
0.831
TFCP2L1
M04886_2.00
Homo sapiens
DCYRGHHNNDDCYRGH
DCYRGHHNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX
0.771
0.771
UBP1
M04894_2.00
Homo sapiens
DWCYRGHHNNDDCYRGWH
DWCYRGHHNNDDCYRGWH
SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX
0.831
0.831
Tcfcp2l1
M08029_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1
0.744
0.744
TFCP2
M03074_2.00
Homo sapiens
DAWCCGGTTY
RAACCGGWTH
SELEX
Jolma et al.(2013)
TFCP2_1
0.773
0.773
Tcfcp2l1
M08030_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1
0.744
0.744
Tcfcp2l1
M09127_2.00
Mus musculus
DDCYRGYTYHNDCYRGHYB
VRDCYRGHNDRARCYRGHH
Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C
0.744
0.744
TFCP2
M03075_2.00
Homo sapiens
WCCGGWWHDAWCYGGW
WCCRGWTHDWWCCGGW
SELEX
Jolma et al.(2013)
TFCP2_2
0.773
0.773
TFCP2
M04889_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX
0.773
0.773
TFCP2
M04891_2.00
Homo sapiens
AWCYGGTTHNDACCGGTW
WACCGGTHNDAACCRGWT
SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX
0.773
0.773
TFCP2
M10610_2.00
Homo sapiens
CTKGKTHKDGC
GCHMDAMCMAG
Transfac
Matys et al.(2006)
V$CP2_01
0.773
0.773
TFCP2
M10611_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_02
0.773
0.773
TFCP2
M10612_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q4
0.773
0.773
TFCP2
M10613_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q6
0.773
0.773
TFCP2
M04890_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX
0.773
0.773
TFCP2
M04892_2.00
Homo sapiens
AWCCGGWTNDAWCCGGTT
AACCGGWTHNAACCGGWT
SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX
0.773
0.773
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000038077
Grainyhead
12
240
NQKGQQNLMDDVLALPIFKQEESSLPSENENMILPFQYVLCAPTSPAVKLHDETLTYLNQGQSYEIRMLDNRKIGELPEITGKMVKSIIRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDLDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENEEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQ
ENSTRUP00000038078
Grainyhead
41
260
SDVLALPIFKQEESSLPSENENMILPFQYVLCAPTSPAVKLHDETLTYLNQGQSYEIRMLDNRKIGELPEITGKMVKSIIRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDLDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENEEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQ
ENSTRUP00000038079
Grainyhead
41
260
SDVLALPIFKQEESSLPSENENMILPFQYVLCAPTSPAVKLHDETLTYLNQGQSYEIRMLDNRKIGELPEITGKMVKSIIRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDLDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENEEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQ
ENSTRUP00000038080
Grainyhead
41
260
SDVLALPIFKQEESSLPSENENMILPFQYVLCAPTSPAVKLHDETLTYLNQGQSYEIRMLDNRKIGELPEITGKMVKSIIRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDLDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENEEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQ
ENSTRUP00000038081
Grainyhead
13
229
LALPIFKQEESSLPSENENMILPFQYVLCAPTSPAVKLHDETLTYLNQGQSYEIRMLDNRKIGELPEITGKMVKSIIRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDLDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENEEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQ
ENSTRUP00000038082
Grainyhead
5
219
LPIFKQEESSLPSENENMILPFQYVLCAPTSPAVKLHDETLTYLNQGQSYEIRMLDNRKIGELPEITGKMVKSIIRVVFHDRRLQYTEHQQLEGWRWNRPGDRILDLDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENEEYTEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQ
ENSTRUP00000038083
POU
448
519
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLAEAE
ENSTRUP00000038083
Homeodomain
541
597
RKRRTSFTPQAIEVLNSYFKKNALPTGQEITEIARELNYDREVVRVWFCNRRQTLKN
ENSTRUP00000038084
POU
421
492
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLAEAE
ENSTRUP00000038084
Homeodomain
514
570
RKRRTSFTPQAIEVLNSYFKKNALPTGQEITEIARELNYDREVVRVWFCNRRQTLKN
ENSTRUP00000038085
POU
394
465
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLAEAE
ENSTRUP00000038085
Homeodomain
487
543
RKRRTSFTPQAIEVLNSYFKKNALPTGQEITEIARELNYDREVVRVWFCNRRQTLKN
ENSTRUP00000038086
POU
368
419
INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICSIAILSA
ENSTRUP00000038086
POU
433
472
DKDITKLKCILCGRFEKLDITPKSAQKLKPVLEKWLAEAE
ENSTRUP00000038086
Homeodomain
494
550
RKRRTSFTPQAIEVLNSYFKKNALPTGQEITEIARELNYDREVVRVWFCNRRQTLKN
Links
Other
Homeodomain,POU
family TFs
Other
Takifugu rubripes
TFs
200 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy