CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pdm2
(
Drosophila melanogaster
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
FBgn0004394
T238714_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pdm2
M03904_2.00
Drosophila melanogaster
NDTATGCAAATKWVB
VBWMATTTGCATAHN
SELEX
Nitta et al.(2015)
pdm2_1
(Direct)
(Direct)
pdm2
M03905_2.00
Drosophila melanogaster
WTATGCAAATKAGNW
WNCTMATTTGCATAW
SELEX
Nitta et al.(2015)
pdm2_2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0079973
POU
684
755
TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDAD
FBpp0079973
Homeodomain
787
843
RKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKR
FBpp0079974
POU
289
360
TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDAD
FBpp0079974
Homeodomain
392
448
RKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKR
FBpp0309438
POU
684
755
TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDAD
FBpp0309438
Homeodomain
787
843
RKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKR
FBpp0309439
POU
684
755
TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDAD
FBpp0309439
Homeodomain
787
843
RKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKR
Links
Other
Homeodomain,POU
family TFs
Other
Drosophila melanogaster
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy