Alligator_sinensis_CCG017363.1 (Alligator sinensis)
Homeodomain,POU

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
Alligator_sinensis_CCG017363.1 T238905_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
POU3F4
M00366_2.00
Homo sapiens
NWATKHN

NDMATWN
PBM
Barrera et al.(2016)
POU3F4_REF
1.000 1.000
Pou3f4
M00550_2.00
Mus musculus
NWWATKHNNN

NNNDMATWWN
PBM
Berger et al.(2008)
Pou3f4_3773
1.000 1.000
POU3F4
M03317_2.00
Homo sapiens
TATGCWAAT

ATTWGCATA
SELEX
Jolma et al.(2013)
POU3F4_1
1.000 1.000
POU3F4
M03318_2.00
Homo sapiens
TGMATAAWTHW

WDAWTTATKCA
SELEX
Jolma et al.(2013)
POU3F4_2
1.000 1.000
POU3F4
M05492_2.00
Homo sapiens
NYWYGCATAATB

VATTATGCRWRN
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_1
1.000 1.000
POU3F4
M05493_2.00
Homo sapiens
NTAATGABATGCRN

NYGCATVTCATTAN
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_2
1.000 1.000
POU3F4
M05494_2.00
Homo sapiens
NYGCATWMATTAN

NTAATKWATGCRN
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_3
1.000 1.000
POU3F4
M05495_2.00
Homo sapiens
DHATGYRCRTMD

HKAYGYRCATDH
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_4
1.000 1.000
POU3F4
M05496_2.00
Homo sapiens
DTATGCWAATKRV

BYMATTWGCATAH
SELEX
Yin et al.(2017)
POU3F4_eDBD_HT-SELEX_5
1.000 1.000
POU3F4
M05497_2.00
Homo sapiens
HTAATGAKATGCGH

DCGCATMTCATTAD
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_1
1.000 1.000
POU3F4
M05498_2.00
Homo sapiens
DCGCATAAATTAN

NTAATTTATGCGH
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_2
1.000 1.000
POU3F4
M05499_2.00
Homo sapiens
DTATGCGCATAH

DTATGCGCATAH
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_3
1.000 1.000
POU3F4
M05500_2.00
Homo sapiens
WTATGCWAATKAG

CTMATTWGCATAW
SELEX
Yin et al.(2017)
POU3F4_eDBD_Methyl-HT-SELEX_4
1.000 1.000
For this family, TFs with SR scores > 0.993 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017363.1 POU 189 260
Alligator_sinensis_CCG017363.1 Homeodomain 279 335

Links

Other Homeodomain,POU family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action