Cmyd_10012071 (Chelonia mydas)
Homeodomain,POU

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00157 (Pou) 		IPR001356
IPR000327 		Cmyd_10012071 T238920_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pou3f2
M00552_2.00 		Mus musculus
NWWATBNN
NNVATWWN		 PBM
Berger et al.(2008)
Pou3f2_2824 		1.000 1.000
POU3F2
M03313_2.00 		Homo sapiens
HWTGMATAWWTWA
TWAWWTATKCAWD		 SELEX
Jolma et al.(2013)
POU3F2_1 		1.000 1.000
POU3F2
M03314_2.00 		Homo sapiens
WTATGYWAATKW
WMATTWRCATAW		 SELEX
Jolma et al.(2013)
POU3F2_2 		1.000 1.000
POU3F2
M05473_2.00 		Homo sapiens
NTAATKAKATGCRN
NYGCATMTMATTAN		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_1 		1.000 1.000
POU3F2
M05474_2.00 		Homo sapiens
NYGCATWMATTAN
NTAATKWATGCRN		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_2 		1.000 1.000
POU3F2
M05475_2.00 		Homo sapiens
DHATGYGCATNH
DNATGCRCATDH		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_3 		1.000 1.000
POU3F2
M05476_2.00 		Homo sapiens
DTATGCWAATKAV
BTMATTWGCATAH		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_4 		1.000 1.000
POU3F2
M05477_2.00 		Homo sapiens
TAATKMNNNNNNTMATKA
TMATKANNNNNNKMATTA		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_5 		1.000 1.000
POU3F2
M09220_2.00 		Homo sapiens
YHCATKMMWWWBYMWNN
NNWKRVWWWKKMATGDR		 Misc
Kulakovskiy et al.(2013)
PO3F2_HUMAN.H11MO.0.A 		1.000 1.000
Pou3f2
M09228_2.00 		Mus musculus
HWCATGMATATKYAWD
HWTRMATATKCATGWD		 Misc
Kulakovskiy et al.(2013)
PO3F2_MOUSE.H11MO.0.A 		1.000 1.000
POU3F2
M10843_2.00 		Homo sapiens
NNCATBSDWAATVMRH
DYKBATTWHSVATGNN		 Transfac
Matys et al.(2006)
V$BRN2_01 		1.000 1.000
POU3F2
M10844_2.00 		Homo sapiens
ATGMATWWATTCAT
ATGAATWWATKCAT		 Transfac
Matys et al.(2006)
V$POU3F2_01 		1.000 1.000
POU3F2
M10845_2.00 		Homo sapiens
TTATGYTAAT
ATTARCATAA		 Transfac
Matys et al.(2006)
V$POU3F2_02 		1.000 1.000
POU3F2
M10846_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$POU3F2_Q2 		1.000 1.000
POU3F2
M05478_2.00 		Homo sapiens
NTAATGAKATGCGH
DCGCATMTCATTAN		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_1 		1.000 1.000
POU3F2
M05479_2.00 		Homo sapiens
RCGCATAAATTAN
NTAATTTATGCGY		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_2 		1.000 1.000
POU3F2
M05480_2.00 		Homo sapiens
DHATGCGCATDH
DHATGCGCATDH		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_3 		1.000 1.000
POU3F2
M05481_2.00 		Homo sapiens
WTATGCWAATKAG
CTMATTWGCATAW		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_4 		1.000 1.000
POU3F2
M05482_2.00 		Homo sapiens
TAATKANNNNNTAATKA
TMATTANNNNNTMATTA		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_5 		1.000 1.000
For this family, TFs with SR scores > 0.993 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012071 POU 90 161
Cmyd_10012071 Homeodomain 180 236

Links

Other Homeodomain,POU family TFs
Other Chelonia mydas TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPPYG00000016860 Pongo abelii ENSPPYG00000016860 I 1.000
POU3F2 Pan troglodytes ENSPTRG00000029496 I 1.000
POU3F2 Procavia capensis ENSPCAG00000008737 I 1.000
ENSPANG00000006100 Papio anubis ENSPANG00000006100 I 1.000
Pou3f2 Mus musculus ENSMUSG00000095139 D 1.000
POU3F2 Otolemur garnettii ENSOGAG00000024248 I 1.000
Pou3f2 Rattus norvegicus ENSRNOG00000006908 I 1.000
POU3F2 Sus scrofa ENSSSCG00000004346 I 1.000
Pvit_09307 Pogona vitticeps Pvit_09307 I 1.000
XP_002934918 Xenopus tropicalis XP_002934918 I 1.000
Ogr12763 Ophisaurus gracilis Ogr12763 I 1.000
Myotis_brandtii_Pou3f2_10025237 Myotis brandtii Myotis_brandtii_Pou3f2_10025237 I 1.000
Alligator_sinensis_CCG004860.1 Alligator sinensis Alligator_sinensis_CCG004860.1 I 1.000
ENSMPUG00000001529 Mustela putorius furo ENSMPUG00000001529 I 1.000
POU3F2 Monodelphis domestica ENSMODG00000018122 I 1.000
ENSCJAG00000001286 Callithrix jacchus ENSCJAG00000001286 I 1.000
ENSCPOG00000003168 Cavia porcellus ENSCPOG00000003168 I 1.000
POU3F2 Canis familiaris ENSCAFG00000029595 I 1.000
ENSBTAG00000024773 Bos taurus ENSBTAG00000024773 I 1.000
POU3F2 Anolis carolinensis ENSACAG00000023192 I 1.000
ENSAMEG00000011263 Ailuropoda melanoleuca ENSAMEG00000011263 I 1.000
ENSCSAG00000018978 Chlorocebus sabaeus ENSCSAG00000018978 I 1.000
POU3F2 Dasypus novemcinctus ENSDNOG00000007219 I 1.000
POU3F2 Gorilla gorilla ENSGGOG00000028066 I 1.000
POU3F2 Myotis lucifugus ENSMLUG00000016141 I 1.000
POU3F2 Homo sapiens ENSG00000184486 D 1.000
POU3F2 Echinops telfairi ENSETEG00000020341 I 1.000
ENSECAG00000015143 Equus caballus ENSECAG00000015143 I 1.000
ENSACAG00000008907 Anolis carolinensis ENSACAG00000008907 I 1.000