Cmyd_10012071 (Chelonia mydas)
Homeodomain,POU

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00157 (Pou) 		IPR001356
IPR000327 		Cmyd_10012071 T238920_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pou3f2
M00552_2.00 		Mus musculus
NWWATBNN
NNVATWWN		 PBM
Berger et al.(2008)
Pou3f2_2824 		1.000 1.000
POU3F2
M03313_2.00 		Homo sapiens
HWTGMATAWWTWA
TWAWWTATKCAWD		 SELEX
Jolma et al.(2013)
POU3F2_1 		1.000 1.000
POU3F2
M03314_2.00 		Homo sapiens
WTATGYWAATKW
WMATTWRCATAW		 SELEX
Jolma et al.(2013)
POU3F2_2 		1.000 1.000
POU3F2
M05473_2.00 		Homo sapiens
NTAATKAKATGCRN
NYGCATMTMATTAN		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_1 		1.000 1.000
POU3F2
M05474_2.00 		Homo sapiens
NYGCATWMATTAN
NTAATKWATGCRN		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_2 		1.000 1.000
POU3F2
M05475_2.00 		Homo sapiens
DHATGYGCATNH
DNATGCRCATDH		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_3 		1.000 1.000
POU3F2
M05476_2.00 		Homo sapiens
DTATGCWAATKAV
BTMATTWGCATAH		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_4 		1.000 1.000
POU3F2
M05477_2.00 		Homo sapiens
TAATKMNNNNNNTMATKA
TMATKANNNNNNKMATTA		 SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_5 		1.000 1.000
POU3F2
M09220_2.00 		Homo sapiens
YHCATKMMWWWBYMWNN
NNWKRVWWWKKMATGDR		 Misc
Kulakovskiy et al.(2013)
PO3F2_HUMAN.H11MO.0.A 		1.000 1.000
Pou3f2
M09228_2.00 		Mus musculus
HWCATGMATATKYAWD
HWTRMATATKCATGWD		 Misc
Kulakovskiy et al.(2013)
PO3F2_MOUSE.H11MO.0.A 		1.000 1.000
POU3F2
M10843_2.00 		Homo sapiens
NNCATBSDWAATVMRH
DYKBATTWHSVATGNN		 Transfac
Matys et al.(2006)
V$BRN2_01 		1.000 1.000
POU3F2
M10844_2.00 		Homo sapiens
ATGMATWWATTCAT
ATGAATWWATKCAT		 Transfac
Matys et al.(2006)
V$POU3F2_01 		1.000 1.000
POU3F2
M10845_2.00 		Homo sapiens
TTATGYTAAT
ATTARCATAA		 Transfac
Matys et al.(2006)
V$POU3F2_02 		1.000 1.000
POU3F2
M10846_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$POU3F2_Q2 		1.000 1.000
POU3F2
M05478_2.00 		Homo sapiens
NTAATGAKATGCGH
DCGCATMTCATTAN		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_1 		1.000 1.000
POU3F2
M05479_2.00 		Homo sapiens
RCGCATAAATTAN
NTAATTTATGCGY		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_2 		1.000 1.000
POU3F2
M05480_2.00 		Homo sapiens
DHATGCGCATDH
DHATGCGCATDH		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_3 		1.000 1.000
POU3F2
M05481_2.00 		Homo sapiens
WTATGCWAATKAG
CTMATTWGCATAW		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_4 		1.000 1.000
POU3F2
M05482_2.00 		Homo sapiens
TAATKANNNNNTAATKA
TMATTANNNNNTMATTA		 SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_5 		1.000 1.000
For this family, TFs with SR scores > 0.993 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012071 POU 90 161
Cmyd_10012071 Homeodomain 180 236

Links

Other Homeodomain,POU family TFs
Other Chelonia mydas TFs

Invalid Input OrderBy

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action