CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Ogr18087
(
Ophisaurus gracilis
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
Ogr18087
T238981_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU6F2
M00363_2.00
Homo sapiens
NTAABNNN
NNNVTTAN
PBM
Barrera et al.(2016)
POU6F2_REF
0.994
0.994
POU6F2
M03303_2.00
Homo sapiens
DVCTMATTAH
DTAATKAGBH
SELEX
Jolma et al.(2013)
POU6F2_1
0.994
0.994
POU6F2
M03304_2.00
Homo sapiens
HTAATKAGCTMATTAD
HTAATKAGCTMATTAD
SELEX
Jolma et al.(2013)
POU6F2_2
0.994
0.994
POU6F2
M03305_2.00
Homo sapiens
NNTAATKAGS
SCTMATTANN
SELEX
Jolma et al.(2013)
POU6F2_3
0.994
0.994
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr18087
POU
168
218
VNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILR
Ogr18087
POU
230
275
NTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAE
Ogr18087
Homeodomain
297
353
RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN
Links
Other
Homeodomain,POU
family TFs
Other
Ophisaurus gracilis
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy