CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pou6f2
(
Xenopus tropicalis
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
XB-GENE-853682
T239077_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU6F2
M00363_2.00
Homo sapiens
NTAABNNN
NNNVTTAN
PBM
Barrera et al.(2016)
POU6F2_REF
1.000
1.000
POU6F2
M03303_2.00
Homo sapiens
DVCTMATTAH
DTAATKAGBH
SELEX
Jolma et al.(2013)
POU6F2_1
1.000
1.000
POU6F2
M03304_2.00
Homo sapiens
HTAATKAGCTMATTAD
HTAATKAGCTMATTAD
SELEX
Jolma et al.(2013)
POU6F2_2
1.000
1.000
POU6F2
M03305_2.00
Homo sapiens
NNTAATKAGS
SCTMATTANN
SELEX
Jolma et al.(2013)
POU6F2_3
1.000
1.000
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002937033
POU
470
520
VNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILR
XP_002937033
POU
533
577
TIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAE
XP_002937033
Homeodomain
599
655
RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN
XP_002937034
POU
470
541
VNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRFEKLDITPKSAQKIKPVLERWMAEAE
XP_002937034
Homeodomain
563
619
RKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKN
Links
Other
Homeodomain,POU
family TFs
Other
Xenopus tropicalis
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy