CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_03345
(
Verticillium albo atrum
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
VDBG_03345
T239565_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SKN7
M00061_2.00
Saccharomyces cerevisiae
AYGGCCRG
CYGGCCRT
PBM
Badis et al.(2008)
SKN7_2117
0.387
0.583
SKN7
M01555_2.00
Saccharomyces cerevisiae
NBGGCBDNNN
NNNHVGCCVN
PBM
Zhu et al.(2009)
Skn7
0.387
0.583
SKN7
M07490_2.00
Saccharomyces cerevisiae
GGCCRN
NYGGCC
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0381.1
0.387
0.583
SKN7
M08582_2.00
Saccharomyces cerevisiae
GBCBVGSCS
SGSCBVGVC
Misc
DeBoer et al.(2011)
YHR206W_380
0.387
0.583
SKN7
M08583_2.00
Saccharomyces cerevisiae
GGCCRN
NYGGCC
Misc
DeBoer et al.(2011)
YHR206W_583
0.387
0.583
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_03345T0
HSF
18
121
FVRKLYKFVHPADPAYANIVRWGNEGDTFVILETDKFTNDILPKHFKHSNFSSFVRQLNKYDFHKLRRNDENNESPYGKQAWEFKHAAFRADRKDNLDNIRRKA
Links
Other
HSF
family TFs
Other
Verticillium albo atrum
TFs
250 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy