Al_scaffold_0003_3814 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Al_scaffold_0003_3814 T239661_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFY2
M03326_2.00 		Homo sapiens
WTCGAWNVRWTCGAW
WTCGAWYBNWTCGAW		 SELEX
Jolma et al.(2013)
HSFY2_1 		0.331 0.303
HSFY2
M03327_2.00 		Homo sapiens
CRTTCGAWW
WWTCGAAYG		 SELEX
Jolma et al.(2013)
HSFY2_2 		0.331 0.303
HSFY2
M03328_2.00 		Homo sapiens
DTCGAAHSNWTCGAW
WTCGAWNSDTTCGAH		 SELEX
Jolma et al.(2013)
HSFY2_3 		0.331 0.303
HSFY1
M05515_2.00 		Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN		 SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_1 		0.331 0.303
HSFY1
M05516_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_2 		0.331 0.303
HSFY2
M05511_2.00 		Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN		 SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_1 		0.331 0.303
HSFY2
M05512_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_2 		0.331 0.303
HSFY1
M05517_2.00 		Homo sapiens
NDTRGAATGTTTRGAATGB
VCATTCYAAACATTCYAHN		 SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_1 		0.331 0.303
HSFY1
M05518_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_2 		0.331 0.303
HSFY2
M05513_2.00 		Homo sapiens
NDWRGAAYGTTTRGAAYGB
VCRTTCYAAACRTTCYWHN		 SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_1 		0.331 0.303
HSFY2
M05514_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_2 		0.331 0.303
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_3814 HSF 17 110

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.503
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.385
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.370
Cagra.2516s0029 Capsella grandiflora Cagra.2516s0029 N 0.368
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.368
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.367
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.365
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.365
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.365
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.362
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.358
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.349
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.345
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.342
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.338
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.334
HSFY1 Homo sapiens ENSG00000172468 D 0.331
HSFY2 Homo sapiens ENSG00000169953 D 0.331
e_gw.355.85.1 Branchiostoma floridae e_gw.355.85.1 N 0.329
estExt_fgenesh1_pg.C_30124 Sporobolomyces roseus estExt_fgenesh1_pg.C_30124 I 0.329
e_gw.355.83.1 Branchiostoma floridae e_gw.355.83.1 N 0.329
Hsfy2 Mus musculus ENSMUSG00000045336 I 0.326
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I 0.326
Bra025611 Brassica rapa Bra025611 N 0.323
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I 0.322
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.320
Bo4g139270 Brassica oleracea Bo4g139270 N 0.320
SMAR015422 Strigamia maritima SMAR015422 N 0.318