Bra013412 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra013412 T239849_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.344 0.412
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013412.1-P HSF 13 102

Links

Other HSF family TFs
Other Brassica rapa TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra030021 Brassica rapa Bra030021 I 0.485
Bra002882 Brassica rapa Bra002882 I 0.481
Bo1g007320 Brassica oleracea Bo1g007320 I 0.440
Bra013406 Brassica rapa Bra013406 I 0.423
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.422
Bo1g021700 Brassica oleracea Bo1g021700 I 0.406
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.387
Thhalv10027510m.g Eutrema salsugineum Thhalv10027510m.g I 0.377
gw1.24.267.1 Chlorella NC64A gw1.24.267.1 I 0.367
Bo2g165560 Brassica oleracea Bo2g165560 I 0.365
Bra029226 Brassica rapa Bra029226 I 0.364
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.358
gw1.42.207.1 Physcomitrella patens gw1.42.207.1 I 0.357
scaffold_700890.1 Arabidopsis lyrata scaffold_700890.1 I 0.356
Bo1g084910 Brassica oleracea Bo1g084910 N 0.355
Bo2g165540 Brassica oleracea Bo2g165540 I 0.354
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.352
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.352
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.350
Bo4g190160 Brassica oleracea Bo4g190160 I 0.349
Ca_08627 Cicer arietinum Ca_08627 I 0.349
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.349
MDP0000126826 Malus domestica MDP0000126826 I 0.346
Bra016996 Brassica rapa Bra016996 I 0.346
Bra016998 Brassica rapa Bra016998 I 0.346
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.345
Bra022949 Brassica rapa Bra022949 I 0.345
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.345
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.345
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.345
Si019082m.g Setaria italica Si019082m.g I 0.345
HSFA4A Arabidopsis thaliana AT4G18880 D 0.344
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.344
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.344
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.344
Sb04g020050 Sorghum bicolor Sb04g020050 I 0.344
Bo01835s010 Brassica oleracea Bo01835s010 N 0.344
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.344
Bo3g157380 Brassica oleracea Bo3g157380 I 0.344
PK09831.1 Cannabis sativa PK09831.1 I 0.344
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.344
Bo7g106320 Brassica oleracea Bo7g106320 I 0.344
Bra012571 Brassica rapa Bra012571 I 0.344
Bo1g020010 Brassica oleracea Bo1g020010 I 0.343
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.343
TCM_029630 Theobroma cacao TCM_029630 I 0.343
Bra013358 Brassica rapa Bra013358 I 0.343
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.342
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.342
mgf006143m Mimulus guttatus mgf006143m I 0.342
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.342
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.342
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I 0.342
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.341
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.341
Cla009875 Citrullus lanatus Cla009875 I 0.341
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.340
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I 0.339
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.337
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I 0.337
Cucsa.047180 Cucumis sativus Cucsa.047180 I 0.337
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.336
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.336
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.336
Pm010169 Prunus mume Pm010169 I 0.336
AMSG_01638 Thecamonas trahens AMSG_01638 I 0.335
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.335
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.335
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I 0.335
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.335
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.334
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I 0.334
VIT_12s0028g01410 Vitis vinifera VIT_12s0028g01410 I 0.334
SELMODRAFT_25564 Selaginella moellendorffii SELMODRAFT_25564 I 0.333
gene32416-v1.0-hybrid Fragaria vesca gene32416-v1.0-hybrid I 0.333
AMTR_s00069p00130920 Amborella trichopoda AMTR_s00069p00130920 I 0.333
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.332
gw1.207.102.1 Physcomitrella patens gw1.207.102.1 I 0.332
PGSC0003DMG400016270 Solanum tuberosum PGSC0003DMG400016270 I 0.332
GLYMA16G13400 Glycine max GLYMA16G13400 I 0.332
Solyc06g053960.2 Solanum lycopersicum Solyc06g053960.2 I 0.332
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.331
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.331
SELMODRAFT_15442 Selaginella moellendorffii SELMODRAFT_15442 I 0.331
AT-HSFA8 Vitis vinifera VIT_01s0011g05970 I 0.330
Lus10006618.g Linum usitatissimum Lus10006618.g I 0.329
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I 0.329
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.329
TCM_011279 Theobroma cacao TCM_011279 I 0.329
30190.m011156 Ricinus communis 30190.m011156 I 0.328
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.328
Cucsa.116340 Cucumis sativus Cucsa.116340 I 0.328
chr2.CM0304.780.nc Lotus japonicus chr2.CM0304.780.nc I 0.328
Eucgr.A01948 Eucalyptus grandis Eucgr.A01948 I 0.328
Bostr.3148s0205 Boechera stricta Bostr.3148s0205 I 0.327
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.327
estExt_Genewise1.C_840063 Physcomitrella patens estExt_Genewise1.C_840063 I 0.327
PK12544.1 Cannabis sativa PK12544.1 I 0.327
Solyc09g082670.2 Solanum lycopersicum Solyc09g082670.2 I 0.327
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I 0.327
GSMUA_Achr11G10320_001 Musa acuminata GSMUA_Achr11G10320_001 I 0.327
Bra017595 Brassica rapa Bra017595 I 0.326
scaffold_702717.1 Arabidopsis lyrata scaffold_702717.1 I 0.326
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.326
Bo9g062710 Brassica oleracea Bo9g062710 I 0.326
30026.m001484 Ricinus communis 30026.m001484 I 0.326
PGSC0003DMG400017846 Solanum tuberosum PGSC0003DMG400017846 I 0.325
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.325
Solyc08g005170.2 Solanum lycopersicum Solyc08g005170.2 I 0.325
RSKR_0000052100 Rhabditophanes kr3021 RSKR_0000052100 I 0.325
Lus10036062.g Linum usitatissimum Lus10036062.g I 0.325
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.325
Phatr3_J48667 Phaeodactylum tricornutum Phatr3_J48667 N 0.324
estExt_fgenesh1_pm.C_2490014 Physcomitrella patens estExt_fgenesh1_pm.C_2490014 I 0.324
AMSG_03636 Thecamonas trahens AMSG_03636 I 0.324
GLYMA15G09280 Glycine max GLYMA15G09280 I 0.323
Bra020988 Brassica rapa Bra020988 I 0.323
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.323
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.322
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.322
evm.TU.supercontig_157.44 Carica papaya evm.TU.supercontig_157.44 I 0.322
GSMUA_Achr4G10060_001 Musa acuminata GSMUA_Achr4G10060_001 I 0.322
Eucgr.H02675 Eucalyptus grandis Eucgr.H02675 I 0.322
Lus10022546.g Linum usitatissimum Lus10022546.g I 0.321
MDP0000127499 Malus domestica MDP0000127499 I 0.321
Traes_6AS_1537629B3 Triticum aestivum Traes_6AS_1537629B3 I 0.321
CHLREDRAFT_122706 Chlamydomonas reinhardtii CHLREDRAFT_122706 I 0.321
F775_00937 Aegilops tauschii F775_00937 I 0.321
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I 0.321
BRADI3G43710 Brachypodium distachyon BRADI3G43710 I 0.321
Bo7g061750 Brassica oleracea Bo7g061750 I 0.321
GRMZM2G179802 Zea mays GRMZM2G179802 I 0.321
PGSC0003DMG400014811 Solanum tuberosum PGSC0003DMG400014811 I 0.321
Lus10016634.g Linum usitatissimum Lus10016634.g I 0.320
GRMZM2G165272 Zea mays GRMZM2G165272 I 0.320
Lus10040091.g Linum usitatissimum Lus10040091.g I 0.320
SapurV1A.3884s0010 Salix purpurea SapurV1A.3884s0010 I 0.319
SapurV1A.0852s0050 Salix purpurea SapurV1A.0852s0050 I 0.319
cassava44108.valid.m1 Manihot esculenta cassava44108.valid.m1 I 0.319
estExt_Genewise1.C_510007 Bigelowiella natans estExt_Genewise1.C_510007 I 0.319
Traes_5DL_431CCA490 Triticum aestivum Traes_5DL_431CCA490 I 0.319
F775_11681 Aegilops tauschii F775_11681 I 0.319
cassava44107.valid.m1 Manihot esculenta cassava44107.valid.m1 I 0.319
MTR_5g029680 Medicago truncatula MTR_5g029680 I 0.319
SapurV1A.0029s0230 Salix purpurea SapurV1A.0029s0230 I 0.319
Lus10030956.g Linum usitatissimum Lus10030956.g I 0.319
Sb02g030490 Sorghum bicolor Sb02g030490 I 0.319
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.319
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.319
gene13904-v1.0-hybrid Fragaria vesca gene13904-v1.0-hybrid I 0.318
Gorai.003G183900 Gossypium raimondii Gorai.003G183900 I 0.318
mgf006947m Mimulus guttatus mgf006947m I 0.318
TCM_016563 Theobroma cacao TCM_016563 I 0.318
Gorai.008G225200 Gossypium raimondii Gorai.008G225200 I 0.318
MTR_5g089170 Medicago truncatula MTR_5g089170 I 0.318