CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra025606
(
Brassica rapa
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
Bra025606
T239864_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.350
0.368
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.350
0.368
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.332
0.379
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.329
0.368
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.329
0.368
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra025606.1-P
HSF
10
108
FYIQLYQIIDDRSSDQIISWNKSNNNSFIVWDLKKLRSNILPKSSSVLGKNMTEFIAKLRSHGFKTVVKGPGELEFSHDDFERGPLMKKMMVKALSERI
Links
Other
HSF
family TFs
Other
Brassica rapa
TFs
293 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy