CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Hsf2
(
Rattus norvegicus
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
ENSRNOG00000000808
T240399_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and spermatogenesis. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in nucleus. Orthologous to human HSF2 (heat shock transcription factor 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hsf2
M09231_2.00
Mus musculus
VGAABVTTCKVGAN
NTCBMGAABVTTCB
Misc
Kulakovskiy et al.(2013)
HSF2_MOUSE.H11MO.0.A
0.643
0.979
HSF2
M03324_2.00
Homo sapiens
GAANVTTCTAGAA
TTCTAGAABNTTC
SELEX
Jolma et al.(2013)
HSF2_1
0.636
0.979
HSF2
M02744_2.00
Homo sapiens
GAABGTTCTRGA
TCYAGAACVTTC
SELEX
Jolma et al.(2010)
HSF2_dimertrimer
0.636
0.979
HSF2
M05505_2.00
Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB
SELEX
Yin et al.(2017)
HSF2_eDBD_HT-SELEX
0.636
0.979
HSF2
M05507_2.00
Homo sapiens
VGAANNTTCBVGAAN
NTTCBVGAANNTTCB
SELEX
Yin et al.(2017)
HSF2_FL_HT-SELEX
0.636
0.979
HSF2
M09229_2.00
Homo sapiens
VGAABVTTCKVGAN
NTCBMGAABVTTCB
Misc
Kulakovskiy et al.(2013)
HSF2_HUMAN.H11MO.0.A
0.636
0.979
HSF2
M10859_2.00
Homo sapiens
VGAANNWTCB
VGAWNNTTCB
Transfac
Matys et al.(2006)
V$HSF2_01
0.636
0.979
HSF2
M10860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF2_02
0.636
0.979
HSF2
M10861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF2_Q6
0.636
0.979
HSF2
M05506_2.00
Homo sapiens
RGAABVTTCYRGAWN
NWTCYRGAABVTTCY
SELEX
Yin et al.(2017)
HSF2_eDBD_Methyl-HT-SELEX
0.636
0.979
HSF2
M05508_2.00
Homo sapiens
RGAABVTTCYRGAWN
NWTCYRGAABVTTCY
SELEX
Yin et al.(2017)
HSF2_FL_Methyl-HT-SELEX
0.636
0.979
hsf2
M02248_2.00
Danio rerio
NNNWGTTCTATNN
NNATAGAACWNNN
PBM
Weirauch et al.(2014)
pTH9010
0.606
0.896
HSF1
M03329_2.00
Homo sapiens
GAANVTTCBVGAA
TTCBVGAABNTTC
SELEX
Jolma et al.(2013)
HSF1_1
0.406
0.677
HSF1
M03330_2.00
Homo sapiens
GAANRTTCBAGAA
TTCTVGAAYNTTC
SELEX
Jolma et al.(2013)
HSF1_2
0.406
0.677
HSF1
M05523_2.00
Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB
SELEX
Yin et al.(2017)
HSF1_eDBD_HT-SELEX
0.406
0.677
HSF1
M05525_2.00
Homo sapiens
VGAANRTTCKVGAAN
NTTCBMGAAYNTTCB
SELEX
Yin et al.(2017)
HSF1_FL_HT-SELEX
0.406
0.677
HSF1
M07977_2.00
Homo sapiens
GDCSYGGGTTCRADYCCC
GGGRHTYGAACCCRSGHC
ChIP-seq
Gerstein et al.(2012)
HepG2_HSF1_Stanford
0.406
0.677
HSF1
M09230_2.00
Homo sapiens
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN
Misc
Kulakovskiy et al.(2013)
HSF1_HUMAN.H11MO.0.A
0.406
0.677
Hsf1
M09232_2.00
Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN
Misc
Kulakovskiy et al.(2013)
HSF1_MOUSE.H11MO.0.A
0.406
0.677
HSF1
M09592_2.00
Homo sapiens
NNBBCYRGAANNTTCYRGVV
BBCYRGAANNTTCYRGVVNN
Misc
Heinz et al.(2010)
HepG2-HSF1_GSE31477
0.406
0.677
Hsf1
M09593_2.00
Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN
Misc
Heinz et al.(2010)
Striatum-HSF1_GSE38000
0.406
0.677
HSF1
M10863_2.00
Homo sapiens
NGAAHNTTCY
RGAANDTTCN
Transfac
Matys et al.(2006)
V$HSF1_01
0.406
0.677
HSF1
M10864_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q5_01
0.406
0.677
HSF1
M10865_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q5
0.406
0.677
HSF1
M10866_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q6_01
0.406
0.677
HSF1
M10867_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF1_Q6
0.406
0.677
HSF1
M10868_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF_Q6
0.406
0.677
HSF1
M05524_2.00
Homo sapiens
RGAANRTTCYRGAWN
NWTCYRGAAYNTTCY
SELEX
Yin et al.(2017)
HSF1_eDBD_Methyl-HT-SELEX
0.406
0.677
HSF1
M05526_2.00
Homo sapiens
RGAANVTTCYRGAWN
NWTCYRGAABNTTCY
SELEX
Yin et al.(2017)
HSF1_FL_Methyl-HT-SELEX
0.406
0.677
ANIA_08035
M02247_2.00
Aspergillus nidulans
NNNNTTCYRN
NYRGAANNNN
PBM
Weirauch et al.(2014)
pTH8231
0.402
0.479
hsf-1
M02249_2.00
Neurospora crassa
NNNTTCBDNN
NNHVGAANNN
PBM
Weirauch et al.(2014)
pTH8857
0.391
0.458
HSF4
M03325_2.00
Homo sapiens
GAANNTTCBVGAA
TTCBVGAANNTTC
SELEX
Jolma et al.(2013)
HSF4_1
0.381
0.625
HSF4
M05509_2.00
Homo sapiens
VGAABVTTCKVGAAN
NTTCBMGAABVTTCB
SELEX
Yin et al.(2017)
HSF4_eDBD_HT-SELEX
0.381
0.625
HSF4
M10862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HSF4_Q3
0.381
0.625
HSF4
M05510_2.00
Homo sapiens
RGAABVWDCYRGAWN
NWTCYRGHWBVTTCY
SELEX
Yin et al.(2017)
HSF4_eDBD_Methyl-HT-SELEX
0.381
0.625
HSF1
M00060_2.00
Saccharomyces cerevisiae
NNNTTCNNN
NNNGAANNN
PBM
Badis et al.(2008)
HSF1_4530
0.354
0.458
HSF1
M07489_2.00
Saccharomyces cerevisiae
HVTTCCAT
ATGGAABD
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0319.1
0.354
0.458
HSF1
M08577_2.00
Saccharomyces cerevisiae
TTCTAGAA
TTCTAGAA
Misc
DeBoer et al.(2011)
YGL073W_1461
0.354
0.458
HSF1
M08578_2.00
Saccharomyces cerevisiae
GAANNNNNWRGAA
TTCYWNNNNNTTC
Misc
DeBoer et al.(2011)
YGL073W_411
0.354
0.458
HSF1
M08579_2.00
Saccharomyces cerevisiae
HVTTCCAT
ATGGAABD
Misc
DeBoer et al.(2011)
YGL073W_476
0.354
0.458
HSF1
M08580_2.00
Saccharomyces cerevisiae
RGAABNTTCTRGAA
TTCYAGAANVTTCY
Misc
DeBoer et al.(2011)
YGL073W_615
0.354
0.458
HSF1
M10874_2.00
Saccharomyces cerevisiae
RGAANRGAANRGAAN
NTTCYNTTCYNTTCY
Transfac
Matys et al.(2006)
F$HSF_02
0.354
0.458
HSF1
M10875_2.00
Saccharomyces cerevisiae
RGAANNTTCYNTTCY
RGAANRGAANNTTCY
Transfac
Matys et al.(2006)
F$HSF_03
0.354
0.458
HSF1
M10876_2.00
Saccharomyces cerevisiae
RGAANNTTCYRGAAN
NTTCYRGAANNTTCY
Transfac
Matys et al.(2006)
F$HSF_04
0.354
0.458
HSF1
M10877_2.00
Saccharomyces cerevisiae
NTTCYNTTCYRGAAN
NTTCYRGAANRGAAN
Transfac
Matys et al.(2006)
F$HSF_05
0.354
0.458
HSF1
M10878_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$HSF_Q6
0.354
0.458
Hsf
M03908_2.00
Drosophila melanogaster
BVGAANRTTCTVGAANN
NNTTCBAGAAYNTTCBV
SELEX
Nitta et al.(2015)
Hsf_1
0.326
0.531
Hsf
M03909_2.00
Drosophila melanogaster
NVGAAYNTTCBAGAANN
NNTTCTVGAANRTTCBN
SELEX
Nitta et al.(2015)
Hsf_2
0.326
0.531
Hsf
M03910_2.00
Drosophila melanogaster
NVGAAYNTTCTVGAANN
NNTTCBAGAANRTTCBN
SELEX
Nitta et al.(2015)
Hsf_3
0.326
0.531
Hsf
M03911_2.00
Drosophila melanogaster
NVGAANRTTCBAGAANN
NNTTCTVGAAYNTTCBN
SELEX
Nitta et al.(2015)
Hsf_4
0.326
0.531
Hsf
M06388_2.00
Drosophila melanogaster
KMGAADNTTCKMGA
TCKMGAANHTTCKM
B1H
Zhu et al.(2011)
Hsf_FlyReg_FBgn0001222
0.326
0.531
Hsf
M10869_2.00
Drosophila melanogaster
HTTCK
MGAAD
Transfac
Matys et al.(2006)
I$HSF_01
0.326
0.531
Hsf
M10870_2.00
Drosophila melanogaster
MGAADMGAADMGAAD
HTTCKHTTCKHTTCK
Transfac
Matys et al.(2006)
I$HSF_02
0.326
0.531
Hsf
M10871_2.00
Drosophila melanogaster
MGAADHTTCKHTTCK
MGAADMGAADHTTCK
Transfac
Matys et al.(2006)
I$HSF_03
0.326
0.531
Hsf
M10872_2.00
Drosophila melanogaster
MGAADHTTCKMGAAD
HTTCKMGAADHTTCK
Transfac
Matys et al.(2006)
I$HSF_04
0.326
0.531
Hsf
M10873_2.00
Drosophila melanogaster
HTTCKHTTCKMGAAD
HTTCKMGAADMGAAD
Transfac
Matys et al.(2006)
I$HSF_05
0.326
0.531
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000001059
HSF
10
111
FLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIVKQERDGPVEFQHPHFKQGQDDLLENIKRKV
Links
Other
HSF
family TFs
Other
Rattus norvegicus
TFs
538 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy