CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Hsfy2
(
Rattus norvegicus
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
ENSRNOG00000038569
T240402_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including HSFY2 (heat shock transcription factor Y-linked 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFY2
M03326_2.00
Homo sapiens
WTCGAWNVRWTCGAW
WTCGAWYBNWTCGAW
SELEX
Jolma et al.(2013)
HSFY2_1
0.528
0.716
HSFY2
M03327_2.00
Homo sapiens
CRTTCGAWW
WWTCGAAYG
SELEX
Jolma et al.(2013)
HSFY2_2
0.528
0.716
HSFY2
M03328_2.00
Homo sapiens
DTCGAAHSNWTCGAW
WTCGAWNSDTTCGAH
SELEX
Jolma et al.(2013)
HSFY2_3
0.528
0.716
HSFY1
M05515_2.00
Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN
SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_1
0.528
0.716
HSFY1
M05516_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_2
0.528
0.716
HSFY2
M05511_2.00
Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN
SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_1
0.528
0.716
HSFY2
M05512_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_2
0.528
0.716
HSFY1
M05517_2.00
Homo sapiens
NDTRGAATGTTTRGAATGB
VCATTCYAAACATTCYAHN
SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_1
0.528
0.716
HSFY1
M05518_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_2
0.528
0.716
HSFY2
M05513_2.00
Homo sapiens
NDWRGAAYGTTTRGAAYGB
VCRTTCYAAACRTTCYWHN
SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_1
0.528
0.716
HSFY2
M05514_2.00
Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH
SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_2
0.528
0.716
HSF5
M05519_2.00
Homo sapiens
NRCRTTCTAGAACGYN
NRCGTTCTAGAAYGYN
SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_1
0.325
0.421
HSF5
M05520_2.00
Homo sapiens
YVGAAYRYNNNNNNNNNBHACRTTCBR
YVGAAYGTDVNNNNNNNNNRYRTTCBR
SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_2
0.325
0.421
HSF5
M05521_2.00
Homo sapiens
AACRTTCTAGAAYGTT
AACRTTCTAGAAYGTT
SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_1
0.325
0.421
HSF5
M05522_2.00
Homo sapiens
YRGAAYDYNVNNNNNNNBAACRTTCYR
YRGAAYGTTVNNNNNNNBNRHRTTCYR
SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_2
0.325
0.421
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000055621
HSF
81
196
FPRKLWKIVGSDKFKSIWWDEDGTYIVINEELFKKEVLERKAPFRIFETDSMKSLVRQLNLYGFRKMRQNFQRSASLPDFLAEEKGISASCKLQFYQNPNFLRDCPHLIERMKRRI
Links
Other
HSF
family TFs
Other
Rattus norvegicus
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy