fgenesh1_pg.C_scaffold_7000870 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 fgenesh1_pg.C_scaffold_7000870 T240566_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF4
M03325_2.00 		Homo sapiens
GAANNTTCBVGAA
TTCBVGAANNTTC		 SELEX
Jolma et al.(2013)
HSF4_1 		0.326 0.341
HSF4
M05509_2.00 		Homo sapiens
VGAABVTTCKVGAAN
NTTCBMGAABVTTCB		 SELEX
Yin et al.(2017)
HSF4_eDBD_HT-SELEX 		0.326 0.341
HSF4
M10862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF4_Q3 		0.326 0.341
HSF4
M05510_2.00 		Homo sapiens
RGAABVWDCYRGAWN
NWTCYRGHWBVTTCY		 SELEX
Yin et al.(2017)
HSF4_eDBD_Methyl-HT-SELEX 		0.326 0.341
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.323 0.424
HSF1
M00060_2.00 		Saccharomyces cerevisiae
NNNTTCNNN
NNNGAANNN		 PBM
Badis et al.(2008)
HSF1_4530 		0.320 0.353
HSF1
M07489_2.00 		Saccharomyces cerevisiae
HVTTCCAT
ATGGAABD		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0319.1 		0.320 0.353
HSF1
M08577_2.00 		Saccharomyces cerevisiae
TTCTAGAA
TTCTAGAA		 Misc
DeBoer et al.(2011)
YGL073W_1461 		0.320 0.353
HSF1
M08578_2.00 		Saccharomyces cerevisiae
GAANNNNNWRGAA
TTCYWNNNNNTTC		 Misc
DeBoer et al.(2011)
YGL073W_411 		0.320 0.353
HSF1
M08579_2.00 		Saccharomyces cerevisiae
HVTTCCAT
ATGGAABD		 Misc
DeBoer et al.(2011)
YGL073W_476 		0.320 0.353
HSF1
M08580_2.00 		Saccharomyces cerevisiae
RGAABNTTCTRGAA
TTCYAGAANVTTCY		 Misc
DeBoer et al.(2011)
YGL073W_615 		0.320 0.353
HSF1
M10874_2.00 		Saccharomyces cerevisiae
RGAANRGAANRGAAN
NTTCYNTTCYNTTCY		 Transfac
Matys et al.(2006)
F$HSF_02 		0.320 0.353
HSF1
M10875_2.00 		Saccharomyces cerevisiae
RGAANNTTCYNTTCY
RGAANRGAANNTTCY		 Transfac
Matys et al.(2006)
F$HSF_03 		0.320 0.353
HSF1
M10876_2.00 		Saccharomyces cerevisiae
RGAANNTTCYRGAAN
NTTCYRGAANNTTCY		 Transfac
Matys et al.(2006)
F$HSF_04 		0.320 0.353
HSF1
M10877_2.00 		Saccharomyces cerevisiae
NTTCYNTTCYRGAAN
NTTCYRGAANRGAAN		 Transfac
Matys et al.(2006)
F$HSF_05 		0.320 0.353
HSF1
M10878_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$HSF_Q6 		0.320 0.353
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_7000870 HSF 1 89

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.390
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.390
Carubv10007409m.g Capsella rubella Carubv10007409m.g I 0.383
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.379
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.367
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.358
Eucgr.C03454 Eucalyptus grandis Eucgr.C03454 I 0.347
Bo2g165540 Brassica oleracea Bo2g165540 I 0.346
Eucgr.C03456 Eucalyptus grandis Eucgr.C03456 I 0.346
Bra030021 Brassica rapa Bra030021 I 0.344
Eucgr.C03457 Eucalyptus grandis Eucgr.C03457 I 0.342
Eucgr.C03440 Eucalyptus grandis Eucgr.C03440 I 0.337
Eucgr.L01331 Eucalyptus grandis Eucgr.L01331 I 0.337
Carubv10007333m.g Capsella rubella Carubv10007333m.g I 0.334
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.334
Cagra.13025s0005 Capsella grandiflora Cagra.13025s0005 I 0.334
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.334
SapurV1A.0208s0230 Salix purpurea SapurV1A.0208s0230 I 0.333
Bra029226 Brassica rapa Bra029226 I 0.332
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.331
Eucgr.C03435 Eucalyptus grandis Eucgr.C03435 I 0.331
Bra002882 Brassica rapa Bra002882 I 0.331
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.331
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.331
Aquca_009_00974 Aquilegia coerulea Aquca_009_00974 I 0.330
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.329
Ca_00428 Cicer arietinum Ca_00428 I 0.329
PK09831.1 Cannabis sativa PK09831.1 I 0.329
Solyc09g009100.2 Solanum lycopersicum Solyc09g009100.2 I 0.329
Ca_08627 Cicer arietinum Ca_08627 I 0.328
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.328
Traes_2DL_481253665 Triticum aestivum Traes_2DL_481253665 I 0.328
Traes_2BL_33410A32A Triticum aestivum Traes_2BL_33410A32A I 0.328
scaffold_702717.1 Arabidopsis lyrata scaffold_702717.1 I 0.328
PGSC0003DMG401002683 Solanum tuberosum PGSC0003DMG401002683 I 0.328
GSMUA_Achr3G06990_001 Musa acuminata GSMUA_Achr3G06990_001 I 0.328
HSF4 Dasypus novemcinctus ENSDNOG00000032363 I 0.327
chr5.CM0359.140.nc Lotus japonicus chr5.CM0359.140.nc I 0.327
Eucgr.C03447 Eucalyptus grandis Eucgr.C03447 I 0.327
Hsf4 Dipodomys ordii ENSDORG00000015128 I 0.326
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I 0.326
MLOC_65182 Hordeum vulgare MLOC_65182 I 0.326
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I 0.326
HSF4 Equus caballus ENSECAG00000016708 I 0.326
HSF4 Gorilla gorilla ENSGGOG00000011899 I 0.326
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I 0.326
HSF4 Macaca mulatta ENSMMUG00000005906 I 0.326
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I 0.326
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I 0.326
Hsf4 Mus musculus ENSMUSG00000033249 I 0.326
HSF4 Canis familiaris ENSCAFG00000020379 I 0.326
HSF4 Homo sapiens ENSG00000102878 D 0.326
Eucgr.C03465 Eucalyptus grandis Eucgr.C03465 I 0.326
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I 0.326
HSF4 Tursiops truncatus ENSTTRG00000010241 I 0.326
HSF4 Sus scrofa ENSSSCG00000002792 I 0.326
HSF4 Pteropus vampyrus ENSPVAG00000000402 I 0.326
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I 0.326
HSF4 Pan troglodytes ENSPTRG00000034007 I 0.326
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I 0.326
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I 0.326
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I 0.326
HSF4 Ochotona princeps ENSOPRG00000015074 I 0.326
HSF4 Otolemur garnettii ENSOGAG00000001391 I 0.326
HSF4 Bos taurus ENSBTAG00000003514 I 0.326
Solyc06g053960.2 Solanum lycopersicum Solyc06g053960.2 I 0.325
HSF4 Cavia porcellus ENSCPOG00000010834 I 0.325
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.325
30026.m001484 Ricinus communis 30026.m001484 I 0.325
Bo2g165560 Brassica oleracea Bo2g165560 I 0.325
Eucgr.C03424 Eucalyptus grandis Eucgr.C03424 I 0.325
HSF4 Myotis lucifugus ENSMLUG00000011083 I 0.325
GSMUA_Achr3G15640_001 Musa acuminata GSMUA_Achr3G15640_001 I 0.324
HSF4 Felis catus ENSFCAG00000014099 I 0.324
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.324
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.323
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.323
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.323
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.323
Bra013406 Brassica rapa Bra013406 I 0.323
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.323
OB03G40890 Oryza brachyantha OB03G40890 I 0.323
BGIOSGA009826 Oryza indica BGIOSGA009826 I 0.323
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.323
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.323
OPUNC03G31000 Oryza punctata OPUNC03G31000 I 0.323
HSFA4A Arabidopsis thaliana AT4G18880 D 0.323
ORUFI03G35260 Oryza rufipogon ORUFI03G35260 I 0.323
ORGLA03G0308600 Oryza glaberrima ORGLA03G0308600 I 0.323
Solyc09g082670.2 Solanum lycopersicum Solyc09g082670.2 I 0.323
SELMODRAFT_110881 Selaginella moellendorffii SELMODRAFT_110881 I 0.323
OBART03G33860 Oryza barthii OBART03G33860 I 0.323
SELMODRAFT_107503 Selaginella moellendorffii SELMODRAFT_107503 I 0.323
OGLUM03G33530 Oryza glumaepatula OGLUM03G33530 I 0.323
ONIVA03G35150 Oryza nivara ONIVA03G35150 I 0.323
Bo01835s010 Brassica oleracea Bo01835s010 N 0.322
BRADI2G18980 Brachypodium distachyon BRADI2G18980 I 0.322
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.322
HSF4 Loxodonta africana ENSLAFG00000021984 I 0.322
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.322
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.322
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.321
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.321
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.321
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.321
GRMZM2G301485 Zea mays GRMZM2G301485 I 0.321
Bostr.2128s0078 Boechera stricta Bostr.2128s0078 I 0.321
Bra013358 Brassica rapa Bra013358 I 0.321
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.321
Bo1g020010 Brassica oleracea Bo1g020010 I 0.321
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.321
GLYMA13G21490 Glycine max GLYMA13G21490 I 0.320
8607_YGL073W Saccharomyces paradoxus 8607_YGL073W I 0.320
CML277C Cyanidioschyzon merolae CML277C I 0.320
Pavir.Ga00998 Panicum virgatum Pavir.Ga00998 I 0.320
Sb06g025710 Sorghum bicolor Sb06g025710 I 0.320
LPERR04G18020 Leersia perrieri LPERR04G18020 I 0.320
HSF1 Saccharomyces cerevisiae YGL073W D 0.320
29092.m000454 Ricinus communis 29092.m000454 I 0.320
Bra020988 Brassica rapa Bra020988 I 0.319
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.319
Ciclev10011531m.g Citrus clementina Ciclev10011531m.g I 0.319
7859_YGL073W Saccharomyces mikatae 7859_YGL073W I 0.319
HSFA3 Arabidopsis thaliana AT5G03720 I 0.319
Pm026236 Prunus mume Pm026236 I 0.319
PRUPE_ppa015602mg Prunus persica PRUPE_ppa015602mg I 0.319
orange1.1g046676m.g Citrus sinensis orange1.1g046676m.g I 0.319
AT-HSFA3 Arabidopsis lyrata scaffold_600303.1 I 0.319
TCM_029630 Theobroma cacao TCM_029630 I 0.319
Traes_5BL_FCB1625F3 Triticum aestivum Traes_5BL_FCB1625F3 I 0.319
TRIUR3_18146 Triticum urartu TRIUR3_18146 I 0.318
MLOC_11286 Hordeum vulgare MLOC_11286 I 0.318
SU7_1143 Saccharomyces arboricola SU7_1143 I 0.318
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.318
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.318
Hsf4 Rattus norvegicus ENSRNOG00000015253 I 0.318