AT-HSFA7A (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 fgenesh2_kg.5__1540__AT3G51910.1 T240576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.423 0.655
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.423 0.655
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA

TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.407 0.678
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN

NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.407 0.678
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA

TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.401 0.667
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG

CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.401 0.667
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.398 0.678
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.377 0.609
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.377 0.609
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.375 0.678
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.375 0.678
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB

VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.374 0.586
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA

TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.374 0.586
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.373 0.575
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA

TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.373 0.575
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.366 0.632
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN

NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.338 0.586
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG

CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.338 0.586
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW

WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.338 0.586
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1540__AT3G51910.1 HSF 33 123

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

1381 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_fgenesh1_pm.C_90143 Phytophthora capsici estExt_fgenesh1_pm.C_90143 N 0.000
PITG_17567 Phytophthora infestans PITG_17567 N 0.000
F443_16825 Phytophthora parasitica F443_16825 N 0.000
Phyra84542 Phytophthora ramorum Phyra84542 N 0.000
Physo143987 Phytophthora sojae Physo143987 N 0.000
maker-pag1_scaffold_131-snap-gene-0.19 Pythium aphanidermatum maker-pag1_scaffold_131-snap-gene-0.19 N 0.000
maker-pir_contig_1608-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_1608-fgenesh-gene-0.0 N 0.000
maker-pir_contig_1091-fgenesh-gene-0.1 Pythium irregulare maker-pir_contig_1091-fgenesh-gene-0.1 N 0.000
maker-piw_contig_340-fgenesh-gene-0.6 Pythium iwayamai maker-piw_contig_340-fgenesh-gene-0.6 N 0.000
maker-piw_contig_1604-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_1604-fgenesh-gene-0.2 N 0.000
PYU1_G006426 Pythium ultimum PYU1_G006426 N 0.000
PYU1_G006431 Pythium ultimum PYU1_G006431 N 0.000
maker-pve_contig_640-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_640-fgenesh-gene-0.0 N 0.000