CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g047190
(
Medicago truncatula
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
MTR_5g047190
T241286_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.339
0.595
HSFC1
M00868_2.00
Arabidopsis thaliana
NDTCBNNN
NNNVGAHN
PBM
Franco-Zorrilla et al.(2014)
HSFC1
0.324
0.481
HSFC1
M06943_2.00
Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFC1_col_a
0.324
0.481
HSFC1
M06944_2.00
Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a
0.324
0.481
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES97215
HSF
1
91
MVEDSLIDSIISWSANGRSFIISNSFDLAKDSLPRYFKHNNFSSGRLIRLVRRGMRTGQGFRKVDSEKWEFANNNFVKVQPYLMKNIHMQK
Links
Other
HSF
family TFs
Other
Medicago truncatula
TFs
366 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy