CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400028416
(
Solanum tuberosum
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
PGSC0003DMG400028416
T241648_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.336
0.494
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.332
0.483
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.325
0.494
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.325
0.494
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400073065
HSF
41
131
FLVKTYEMVDDPETDPLVHWTSSKTTFLITDPNKFCVEVLPKYFKHSNLSSFIYQLNNYRFRKVCSYKCEYGNPWFRAGKKHWLKNIKSRI
Links
Other
HSF
family TFs
Other
Solanum tuberosum
TFs
616 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy