PGSC0003DMG400043234 (Solanum tuberosum)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 PGSC0003DMG400043234 T241653_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA

TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.380 0.552
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN

NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.380 0.552
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA

TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.357 0.540
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG

CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.357 0.540
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.350 0.540
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.350 0.540
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.325 0.506
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.325 0.506
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB

VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.322 0.494
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA

TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.322 0.494
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.320 0.506
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400093663 HSF 31 121

Links

Other HSF family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

785 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action