scaffold_700890.1 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 scaffold_700890.1 T242018_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.327 0.509
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_700890.1 HSF 13 74

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.383
Bo1g007320 Brassica oleracea Bo1g007320 I 0.364
Bra013412 Brassica rapa Bra013412 I 0.356
Bra030021 Brassica rapa Bra030021 I 0.356
Bra002882 Brassica rapa Bra002882 I 0.354
evm.TU.supercontig_157.44 Carica papaya evm.TU.supercontig_157.44 I 0.337
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.337
AMTR_s00013p00262410 Amborella trichopoda AMTR_s00013p00262410 I 0.336
Bra022949 Brassica rapa Bra022949 I 0.335
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.334
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.333
SapurV1A.1190s0030 Salix purpurea SapurV1A.1190s0030 I 0.332
Pavir.Aa02052 Panicum virgatum Pavir.Aa02052 I 0.332
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.332
Bo1g021700 Brassica oleracea Bo1g021700 I 0.331
orange1.1g034429m.g Citrus sinensis orange1.1g034429m.g I 0.330
Bo1g084910 Brassica oleracea Bo1g084910 N 0.330
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.328
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.328
Si019082m.g Setaria italica Si019082m.g I 0.328
Bra013358 Brassica rapa Bra013358 I 0.328
Eucgr.H02675 Eucalyptus grandis Eucgr.H02675 I 0.328
Bo1g020010 Brassica oleracea Bo1g020010 I 0.328
mgf006143m Mimulus guttatus mgf006143m I 0.328
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.327
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.327
Sb04g020050 Sorghum bicolor Sb04g020050 I 0.327
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.327
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.327
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.327
Bra012571 Brassica rapa Bra012571 I 0.327
Bo7g106320 Brassica oleracea Bo7g106320 I 0.327
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.327
HSFA4A Arabidopsis thaliana AT4G18880 D 0.327
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.327
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.326
mgf013331m Mimulus guttatus mgf013331m I 0.325
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.325
VIT_05s0029g00340 Vitis vinifera VIT_05s0029g00340 I 0.325
Ciclev10006893m.g Citrus clementina Ciclev10006893m.g I 0.325
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.324
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.324
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.324
MTR_8g083100 Medicago truncatula MTR_8g083100 I 0.324
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.324
MDP0000126826 Malus domestica MDP0000126826 I 0.324
Gorai.006G224000 Gossypium raimondii Gorai.006G224000 I 0.323
gene32416-v1.0-hybrid Fragaria vesca gene32416-v1.0-hybrid I 0.323
MDP0000263056 Malus domestica MDP0000263056 I 0.323
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.323
Bra013406 Brassica rapa Bra013406 I 0.323
PK09831.1 Cannabis sativa PK09831.1 I 0.323
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.323
PGSC0003DMG400004662 Solanum tuberosum PGSC0003DMG400004662 I 0.323
TCM_029630 Theobroma cacao TCM_029630 I 0.323
Pm007815 Prunus mume Pm007815 I 0.322
POPTR_0001s32810 Populus trichocarpa POPTR_0001s32810 I 0.322
PRUPE_ppa026865mg Prunus persica PRUPE_ppa026865mg I 0.322
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.322
Lus10006618.g Linum usitatissimum Lus10006618.g I 0.321
SapurV1A.0058s0140 Salix purpurea SapurV1A.0058s0140 I 0.321
MDP0000613011 Malus domestica MDP0000613011 I 0.321
Ca_08536 Cicer arietinum Ca_08536 I 0.321
POPTR_0017s08630 Populus trichocarpa POPTR_0017s08630 I 0.321
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.320
Bra000235 Brassica rapa Bra000235 I 0.320
Traes_5BL_F80E01D65 Triticum aestivum Traes_5BL_F80E01D65 I 0.320
GLYMA16G13400 Glycine max GLYMA16G13400 I 0.320
Aquca_034_00075 Aquilegia coerulea Aquca_034_00075 I 0.320
gene06570-v1.0-hybrid Fragaria vesca gene06570-v1.0-hybrid I 0.320
PK20762.1 Cannabis sativa PK20762.1 I 0.320
Bostr.11568s0011 Boechera stricta Bostr.11568s0011 I 0.320
AT-HSFB3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001910 I 0.320
Bo3g157380 Brassica oleracea Bo3g157380 I 0.319
Bra032752 Brassica rapa Bra032752 I 0.319
TCM_020222 Theobroma cacao TCM_020222 I 0.319
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.319
Bostr.9017s0008 Boechera stricta Bostr.9017s0008 I 0.319
Solyc12g098520.1 Solanum lycopersicum Solyc12g098520.1 I 0.319
HSFA5 Arabidopsis thaliana AT4G13980 I 0.318
29629.m001435 Ricinus communis 29629.m001435 I 0.318
AT-HSFA5 Arabidopsis lyrata fgenesh2_kg.7__2946__AT4G13980.1 I 0.318
cassava24315.valid.m1 Manihot esculenta cassava24315.valid.m1 I 0.318