CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold_801962.1
(
Arabidopsis lyrata
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
scaffold_801962.1
T242025_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.326
0.494
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_801962.1
HSF
14
95
FRKKLYKIVDDPSTNSIVSWSNNGNSFIIWNESEFCRDVLPRFSHYKEMAPFIRRLGNMGFKKVESEELEYGSDDFVLGLMG
Links
Other
HSF
family TFs
Other
Arabidopsis lyrata
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.3359s0057
Boechera stricta
Bostr.3359s0057
I
0.426
Carubv10027643m.g
Capsella rubella
Carubv10027643m.g
I
0.407
Bostr.0556s0470
Boechera stricta
Bostr.0556s0470
I
0.399
30026.m001484
Ricinus communis
30026.m001484
I
0.345
GLYMA13G29760
Glycine max
GLYMA13G29760
I
0.344
chr6.CM0118.920.nd
Lotus japonicus
chr6.CM0118.920.nd
I
0.343
Solyc07g055710.2
Solanum lycopersicum
Solyc07g055710.2
I
0.341
GLYMA15G09280
Glycine max
GLYMA15G09280
I
0.339
GSMUA_Achr3G15640_001
Musa acuminata
GSMUA_Achr3G15640_001
I
0.339
GSMUA_Achr6G31750_001
Musa acuminata
GSMUA_Achr6G31750_001
I
0.338
GSMUA_Achr8G27750_001
Musa acuminata
GSMUA_Achr8G27750_001
I
0.337
Aquca_039_00029
Aquilegia coerulea
Aquca_039_00029
I
0.337
GRMZM2G118453
Zea mays
GRMZM2G118453
I
0.329
Ca_08627
Cicer arietinum
Ca_08627
I
0.328
Bo3g157380
Brassica oleracea
Bo3g157380
I
0.328
GLYMA08G12630
Glycine max
GLYMA08G12630
I
0.328
Bo1g020010
Brassica oleracea
Bo1g020010
I
0.326
Cagra.4306s0004
Capsella grandiflora
Cagra.4306s0004
I
0.326
HSFA4A
Arabidopsis thaliana
AT4G18880
D
0.326
Bostr.30275s0365
Boechera stricta
Bostr.30275s0365
I
0.326
cassava24811.valid.m1
Manihot esculenta
cassava24811.valid.m1
I
0.326
Bra013358
Brassica rapa
Bra013358
I
0.326
evm.TU.supercontig_50.58
Carica papaya
evm.TU.supercontig_50.58
I
0.326
Carubv10004953m.g
Capsella rubella
Carubv10004953m.g
I
0.326
MTR_8g087540
Medicago truncatula
MTR_8g087540
I
0.326
PDK_20s1342122g001
Phoenix dactylifera
PDK_20s1342122g001
I
0.326
AT-HSFA4A
Arabidopsis lyrata
fgenesh2_kg.7__2405__AT4G18880.1
I
0.326
GLYMA05G29470
Glycine max
GLYMA05G29470
I
0.326
Ciclev10015472m.g
Citrus clementina
Ciclev10015472m.g
I
0.325
scaffold_601314.1
Arabidopsis lyrata
scaffold_601314.1
I
0.325
Gorai.011G036400
Gossypium raimondii
Gorai.011G036400
I
0.325
Bra020988
Brassica rapa
Bra020988
I
0.324
PK09831.1
Cannabis sativa
PK09831.1
I
0.324
Sb03g034630
Sorghum bicolor
Sb03g034630
I
0.324
POPTR_0011s06820
Populus trichocarpa
POPTR_0011s06820
I
0.324
PGSC0003DMG400017334
Solanum tuberosum
PGSC0003DMG400017334
I
0.324
Bostr.30275s0431
Boechera stricta
Bostr.30275s0431
I
0.324
Gorai.010G240800
Gossypium raimondii
Gorai.010G240800
I
0.323
Thhalv10025409m.g
Eutrema salsugineum
Thhalv10025409m.g
I
0.323
Si001439m.g
Setaria italica
Si001439m.g
I
0.323
SELMODRAFT_110881
Selaginella moellendorffii
SELMODRAFT_110881
I
0.323
SELMODRAFT_107503
Selaginella moellendorffii
SELMODRAFT_107503
I
0.323
cassava35573.valid.m1
Manihot esculenta
cassava35573.valid.m1
I
0.323
TCM_029630
Theobroma cacao
TCM_029630
I
0.323
Pavir.Eb03132
Panicum virgatum
Pavir.Eb03132
I
0.323
Lus10005420.g
Linum usitatissimum
Lus10005420.g
I
0.322
Lus10015237.g
Linum usitatissimum
Lus10015237.g
I
0.322
BRADI2G18980
Brachypodium distachyon
BRADI2G18980
I
0.322
gene23802-v1.0-hybrid
Fragaria vesca
gene23802-v1.0-hybrid
I
0.322
PK25112.1
Cannabis sativa
PK25112.1
I
0.321
mgf006143m
Mimulus guttatus
mgf006143m
I
0.321
TCM_001784
Theobroma cacao
TCM_001784
I
0.320
Carubv10024599m.g
Capsella rubella
Carubv10024599m.g
I
0.320
VIT_10s0003g01770
Vitis vinifera
VIT_10s0003g01770
I
0.320
Thhalv10006463m.g
Eutrema salsugineum
Thhalv10006463m.g
I
0.320
cassava14764.m1
Manihot esculenta
cassava14764.m1
I
0.320
Bra025611
Brassica rapa
Bra025611
N
0.320
Bo7g106320
Brassica oleracea
Bo7g106320
I
0.320
Bra012571
Brassica rapa
Bra012571
I
0.320
OB01G39790
Oryza brachyantha
OB01G39790
I
0.319
Ca_00428
Cicer arietinum
Ca_00428
I
0.319
MDP0000263056
Malus domestica
MDP0000263056
I
0.319
Cagra.3262s0013
Capsella grandiflora
Cagra.3262s0013
I
0.319
MDP0000126826
Malus domestica
MDP0000126826
I
0.319
Pm010169
Prunus mume
Pm010169
I
0.318
cassava19285.valid.m1
Manihot esculenta
cassava19285.valid.m1
I
0.318