scaffold_801962.1 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 scaffold_801962.1 T242025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.326 0.494
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_801962.1 HSF 14 95

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.426
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.407
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.399
30026.m001484 Ricinus communis 30026.m001484 I 0.345
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.344
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.343
Solyc07g055710.2 Solanum lycopersicum Solyc07g055710.2 I 0.341
GLYMA15G09280 Glycine max GLYMA15G09280 I 0.339
GSMUA_Achr3G15640_001 Musa acuminata GSMUA_Achr3G15640_001 I 0.339
GSMUA_Achr6G31750_001 Musa acuminata GSMUA_Achr6G31750_001 I 0.338
GSMUA_Achr8G27750_001 Musa acuminata GSMUA_Achr8G27750_001 I 0.337
Aquca_039_00029 Aquilegia coerulea Aquca_039_00029 I 0.337
GRMZM2G118453 Zea mays GRMZM2G118453 I 0.329
Ca_08627 Cicer arietinum Ca_08627 I 0.328
Bo3g157380 Brassica oleracea Bo3g157380 I 0.328
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.328
Bo1g020010 Brassica oleracea Bo1g020010 I 0.326
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.326
HSFA4A Arabidopsis thaliana AT4G18880 D 0.326
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.326
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.326
Bra013358 Brassica rapa Bra013358 I 0.326
evm.TU.supercontig_50.58 Carica papaya evm.TU.supercontig_50.58 I 0.326
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.326
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.326
PDK_20s1342122g001 Phoenix dactylifera PDK_20s1342122g001 I 0.326
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.326
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.326
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.325
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.325
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.325
Bra020988 Brassica rapa Bra020988 I 0.324
PK09831.1 Cannabis sativa PK09831.1 I 0.324
Sb03g034630 Sorghum bicolor Sb03g034630 I 0.324
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.324
PGSC0003DMG400017334 Solanum tuberosum PGSC0003DMG400017334 I 0.324
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.324
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.323
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.323
Si001439m.g Setaria italica Si001439m.g I 0.323
SELMODRAFT_110881 Selaginella moellendorffii SELMODRAFT_110881 I 0.323
SELMODRAFT_107503 Selaginella moellendorffii SELMODRAFT_107503 I 0.323
cassava35573.valid.m1 Manihot esculenta cassava35573.valid.m1 I 0.323
TCM_029630 Theobroma cacao TCM_029630 I 0.323
Pavir.Eb03132 Panicum virgatum Pavir.Eb03132 I 0.323
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.322
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.322
BRADI2G18980 Brachypodium distachyon BRADI2G18980 I 0.322
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.322
PK25112.1 Cannabis sativa PK25112.1 I 0.321
mgf006143m Mimulus guttatus mgf006143m I 0.321
TCM_001784 Theobroma cacao TCM_001784 I 0.320
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.320
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.320
Thhalv10006463m.g Eutrema salsugineum Thhalv10006463m.g I 0.320
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.320
Bra025611 Brassica rapa Bra025611 N 0.320
Bo7g106320 Brassica oleracea Bo7g106320 I 0.320
Bra012571 Brassica rapa Bra012571 I 0.320
OB01G39790 Oryza brachyantha OB01G39790 I 0.319
Ca_00428 Cicer arietinum Ca_00428 I 0.319
MDP0000263056 Malus domestica MDP0000263056 I 0.319
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.319
MDP0000126826 Malus domestica MDP0000126826 I 0.319
Pm010169 Prunus mume Pm010169 I 0.318
cassava19285.valid.m1 Manihot esculenta cassava19285.valid.m1 I 0.318