CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SKN7
(
Saccharomyces cerevisiae
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
YHR206W
T242485_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity and phosphorelay response regulator activity. Involved in several processes, including regulation of transcription from RNA polymerase II promoter in response to oxidative stress; response to singlet oxygen; and transcription elongation from RNA polymerase II promoter. Located in cytosol and nucleus. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human HSF1 (heat shock transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SKN7
M00061_2.00
Saccharomyces cerevisiae
AYGGCCRG
CYGGCCRT
PBM
Badis et al.(2008)
SKN7_2117
(Direct)
(Direct)
SKN7
M01555_2.00
Saccharomyces cerevisiae
NBGGCBDNNN
NNNHVGCCVN
PBM
Zhu et al.(2009)
Skn7
(Direct)
(Direct)
SKN7
M07490_2.00
Saccharomyces cerevisiae
GGCCRN
NYGGCC
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0381.1
(Direct)
(Direct)
SKN7
M08582_2.00
Saccharomyces cerevisiae
GBCBVGSCS
SGSCBVGVC
Misc
DeBoer et al.(2011)
YHR206W_380
(Direct)
(Direct)
SKN7
M08583_2.00
Saccharomyces cerevisiae
GGCCRN
NYGGCC
Misc
DeBoer et al.(2011)
YHR206W_583
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.318
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00061_2.00
HSF
55
157
FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRKI
M01555_2.00
HSF
87
189
FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRKI
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YHR206W
HSF
87
189
FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRKI
Links
Other
HSF
family TFs
Other
Saccharomyces cerevisiae
TFs
195 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy