Alligator_sinensis_CCG007789.1 (Alligator sinensis)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Alligator_sinensis_CCG007789.1 T242541_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFY2
M03326_2.00 		Homo sapiens
WTCGAWNVRWTCGAW
WTCGAWYBNWTCGAW		 SELEX
Jolma et al.(2013)
HSFY2_1 		0.349 0.394
HSFY2
M03327_2.00 		Homo sapiens
CRTTCGAWW
WWTCGAAYG		 SELEX
Jolma et al.(2013)
HSFY2_2 		0.349 0.394
HSFY2
M03328_2.00 		Homo sapiens
DTCGAAHSNWTCGAW
WTCGAWNSDTTCGAH		 SELEX
Jolma et al.(2013)
HSFY2_3 		0.349 0.394
HSFY1
M05515_2.00 		Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN		 SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_1 		0.349 0.394
HSFY1
M05516_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY1_eDBD_HT-SELEX_2 		0.349 0.394
HSFY2
M05511_2.00 		Homo sapiens
NDTVGAAYGWTTCGAAYGB
VCRTTCGAAWCRTTCBAHN		 SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_1 		0.349 0.394
HSFY2
M05512_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY2_eDBD_HT-SELEX_2 		0.349 0.394
HSFY1
M05517_2.00 		Homo sapiens
NDTRGAATGTTTRGAATGB
VCATTCYAAACATTCYAHN		 SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_1 		0.349 0.394
HSFY1
M05518_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY1_eDBD_Methyl-HT-SELEX_2 		0.349 0.394
HSFY2
M05513_2.00 		Homo sapiens
NDWRGAAYGTTTRGAAYGB
VCRTTCYAAACRTTCYWHN		 SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_1 		0.349 0.394
HSFY2
M05514_2.00 		Homo sapiens
DTTCGAAHSDTTCGAAH
DTTCGAAHSDTTCGAAH		 SELEX
Yin et al.(2017)
HSFY2_eDBD_Methyl-HT-SELEX_2 		0.349 0.394
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007789.1 HSF 82 197
Alligator_sinensis_CCG007789.1 HSF 300 391

Links

Other HSF family TFs
Other Alligator sinensis TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I 0.381
HSFY1 Homo sapiens ENSG00000172468 D 0.349
HSFY2 Homo sapiens ENSG00000169953 D 0.349
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I 0.346
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I 0.343
Hsfy2 Mus musculus ENSMUSG00000045336 I 0.343
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I 0.341
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I 0.337
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I 0.336
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I 0.334
Pvit_14501 Pogona vitticeps Pvit_14501 I 0.333
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I 0.331
Afo_R012751 Aptenodytes forsteri Afo_R012751 I 0.330
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I 0.329
Ogr08578 Ophisaurus gracilis Ogr08578 I 0.328
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I 0.327
ENSOANG00000012192 Ornithorhynchus anatinus ENSOANG00000012192 I 0.325
ENSCSAG00000018308 Chlorocebus sabaeus ENSCSAG00000018308 I 0.324
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I 0.323
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I 0.321
ENSACAG00000008631 Anolis carolinensis ENSACAG00000008631 I 0.320