CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh2_pg.C_500047
(
Branchiostoma floridae
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
estExt_fgenesh2_pg.C_500047
T242829_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSF5
M05519_2.00
Homo sapiens
NRCRTTCTAGAACGYN
NRCGTTCTAGAAYGYN
SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_1
0.330
0.474
HSF5
M05520_2.00
Homo sapiens
YVGAAYRYNNNNNNNNNBHACRTTCBR
YVGAAYGTDVNNNNNNNNNRYRTTCBR
SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_2
0.330
0.474
HSF5
M05521_2.00
Homo sapiens
AACRTTCTAGAAYGTT
AACRTTCTAGAAYGTT
SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_1
0.330
0.474
HSF5
M05522_2.00
Homo sapiens
YRGAAYDYNVNNNNNNNBAACRTTCYR
YRGAAYGTTVNNNNNNNBNRHRTTCYR
SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_2
0.330
0.474
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_500047
HSF
23
130
FPEKLWRLAKDARIKCIQWVEGGDTILIYQKSFSQELLNKKEFFKTKSFDSIVRNLNLYGFRKVQLDGVIEQSSKRARKPSGDNLLYYKHPFFHRDKPDTLHQVRRPS
Links
Other
HSF
family TFs
Other
Branchiostoma floridae
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy