fgenesh2_pg.scaffold_142000054 (Branchiostoma floridae)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 fgenesh2_pg.scaffold_142000054 T242883_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSF5
M05519_2.00
Homo sapiens
NRCRTTCTAGAACGYN

NRCGTTCTAGAAYGYN
SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_1
0.323 0.462
HSF5
M05520_2.00
Homo sapiens
YVGAAYRYNNNNNNNNNBHACRTTCBR

YVGAAYGTDVNNNNNNNNNRYRTTCBR
SELEX
Yin et al.(2017)
HSF5_eDBD_HT-SELEX_2
0.323 0.462
HSF5
M05521_2.00
Homo sapiens
AACRTTCTAGAAYGTT

AACRTTCTAGAAYGTT
SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_1
0.323 0.462
HSF5
M05522_2.00
Homo sapiens
YRGAAYDYNVNNNNNNNBAACRTTCYR

YRGAAYGTTVNNNNNNNBNRHRTTCYR
SELEX
Yin et al.(2017)
HSF5_eDBD_Methyl-HT-SELEX_2
0.323 0.462
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_142000054 HSF 85 184

Links

Other HSF family TFs
Other Branchiostoma floridae TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.000
BGIOSGA026049 Oryza indica BGIOSGA026049 N 0.000
Bo2g168020 Brassica oleracea Bo2g168020 N 0.000
Bo8g079200 Brassica oleracea Bo8g079200 N 0.000
Bo9g018500 Brassica oleracea Bo9g018500 N 0.000
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.000
Bra012913 Brassica rapa Bra012913 N 0.000
Bra017831 Brassica rapa Bra017831 N 0.000
Bra031833 Brassica rapa Bra031833 N 0.000
Bra037847 Brassica rapa Bra037847 N 0.000
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.000
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.000
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.000
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.000
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.000
Ca_09342 Cicer arietinum Ca_09342 N 0.000
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N 0.000
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.000
Cla014228 Citrullus lanatus Cla014228 N 0.000
Cla020920 Citrullus lanatus Cla020920 N 0.000
Cucsa.103050 Cucumis sativus Cucsa.103050 N 0.000
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.000
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.000
evm.TU.supercontig_21.100 Carica papaya evm.TU.supercontig_21.100 N 0.000
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.000
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.000
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.000
F775_13634 Aegilops tauschii F775_13634 N 0.000
gene02557-v1.0-hybrid Fragaria vesca gene02557-v1.0-hybrid N 0.000
GLYMA04G04750 Glycine max GLYMA04G04750 N 0.000
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.000
GLYMA10G40421 Glycine max GLYMA10G40421 N 0.000
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.000
GLYMA17G35440 Glycine max GLYMA17G35440 N 0.000
GLYMA18G53440 Glycine max GLYMA18G53440 N 0.000
GLYMA20G26910 Glycine max GLYMA20G26910 N 0.000
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N 0.000
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.000
GRMZM2G044902 Zea mays GRMZM2G044902 N 0.000
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.000
GRMZM2G177110 Zea mays GRMZM2G177110 N 0.000
GSMUA_Achr1G20970_001 Musa acuminata GSMUA_Achr1G20970_001 N 0.000
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N 0.000
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.000
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.000
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N 0.000
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.000
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.000
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.000
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.000
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.000
Lus10007758.g Linum usitatissimum Lus10007758.g N 0.000
MDP0000139025 Malus domestica MDP0000139025 N 0.000
MDP0000794101 Malus domestica MDP0000794101 N 0.000
mgf007319m Mimulus guttatus mgf007319m N 0.000
MLOC_11838 Hordeum vulgare MLOC_11838 N 0.000
MTR_1g106420 Medicago truncatula MTR_1g106420 N 0.000
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.000
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.000
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.000
OBART03G22820 Oryza barthii OBART03G22820 N 0.000
OBART07G20600 Oryza barthii OBART07G20600 N 0.000
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N 0.000
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.000
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.000
OMERI07G17270 Oryza meridionalis OMERI07G17270 N 0.000
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.000
ONIVA07G19050 Oryza nivara ONIVA07G19050 N 0.000
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.000
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 0.000
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.000
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.000
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N 0.000
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.000
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N 0.000
OS03G0445700 Oryza sativa OS03G0445700 N 0.000
OS07G0589000 Oryza sativa OS07G0589000 N 0.000
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N 0.000
Pavir.J00526 Panicum virgatum Pavir.J00526 N 0.000
PGSC0003DMG400025752 Solanum tuberosum PGSC0003DMG400025752 N 0.000
PK03169.1 Cannabis sativa PK03169.1 N 0.000
PK29811.1 Cannabis sativa PK29811.1 N 0.000
Pm005389 Prunus mume Pm005389 N 0.000
Pm021281 Prunus mume Pm021281 N 0.000
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.000
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.000
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.000
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N 0.000
PRUPE_ppa010480mg Prunus persica PRUPE_ppa010480mg N 0.000
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N 0.000
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.000
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N 0.000
Sb01g032580 Sorghum bicolor Sb01g032580 N 0.000
Si002412m.g Setaria italica Si002412m.g N 0.000
Si022660m.g Setaria italica Si022660m.g N 0.000
TCM_012338 Theobroma cacao TCM_012338 N 0.000
TCM_019459 Theobroma cacao TCM_019459 N 0.000
TCM_034722 Theobroma cacao TCM_034722 N 0.000
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.000
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.000
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N 0.000
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N 0.000
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.000
VIT_18s0001g09250 Vitis vinifera VIT_18s0001g09250 N 0.000