Cagra.3262s0013 (Capsella grandiflora)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Cagra.3262s0013 T243029_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.346 0.393
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.324 0.371
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.324 0.371
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.319 0.393
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.319 0.393
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3262s0013.1.p HSF 12 104

Links

Other HSF family TFs
Other Capsella grandiflora TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.580
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.580
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.580
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.573
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.544
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.417
Bra025611 Brassica rapa Bra025611 N 0.416
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.410
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.410
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.406
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.394
Bra025606 Brassica rapa Bra025606 I 0.394
Bo4g139630 Brassica oleracea Bo4g139630 I 0.393
Bra025635 Brassica rapa Bra025635 I 0.388
Bra025608 Brassica rapa Bra025608 I 0.384
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.384
Bo4g139200 Brassica oleracea Bo4g139200 I 0.382
Thhalv10027510m.g Eutrema salsugineum Thhalv10027510m.g I 0.381
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.381
Bra030021 Brassica rapa Bra030021 I 0.377
Bo4g139270 Brassica oleracea Bo4g139270 N 0.377
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.373
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.371
Al_scaffold_0003_3814 Arabidopsis lyrata Al_scaffold_0003_3814 I 0.370
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.370
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.369
Bra002882 Brassica rapa Bra002882 I 0.369
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.365
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.365
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.365
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.365
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.363
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.360
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.360
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.359
Bra013406 Brassica rapa Bra013406 I 0.357
Gorai.007G053900 Gossypium raimondii Gorai.007G053900 I 0.357
PK09831.1 Cannabis sativa PK09831.1 I 0.354
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.354
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.353
Si035526m.g Setaria italica Si035526m.g I 0.352
Pavir.Ib04475 Panicum virgatum Pavir.Ib04475 I 0.352
GRMZM2G384339 Zea mays GRMZM2G384339 I 0.352
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.351
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.351
OMERI03G38170 Oryza meridionalis OMERI03G38170 I 0.350
OGLUM03G41290 Oryza glumaepatula OGLUM03G41290 I 0.350
ONIVA03G43540 Oryza nivara ONIVA03G43540 I 0.350
OPUNC03G38490 Oryza punctata OPUNC03G38490 I 0.350
LPERR03G35390 Leersia perrieri LPERR03G35390 I 0.350
HSFA1 Oryza sativa OS03G0854500 I 0.350
Cagra.2516s0029 Capsella grandiflora Cagra.2516s0029 N 0.350
OBART03G41440 Oryza barthii OBART03G41440 I 0.350
ORGLA03G0383200 Oryza glaberrima ORGLA03G0383200 I 0.350
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.349
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.349
Sb01g000730 Sorghum bicolor Sb01g000730 I 0.348
mgf006143m Mimulus guttatus mgf006143m I 0.348
Pavir.Ia00087 Panicum virgatum Pavir.Ia00087 I 0.348
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.347
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.347
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.347
Bo1g020010 Brassica oleracea Bo1g020010 I 0.347
TCM_029630 Theobroma cacao TCM_029630 I 0.346
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.346
Bra013358 Brassica rapa Bra013358 I 0.346
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.346
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.346
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.346
HSFA4A Arabidopsis thaliana AT4G18880 D 0.346
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.346
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.345
GSMUA_Achr4G04500_001 Musa acuminata GSMUA_Achr4G04500_001 I 0.345
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.345
BRADI1G01130 Brachypodium distachyon BRADI1G01130 I 0.344
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.344
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.344
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.343
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.343
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.343
orange1.1g016378m.g Citrus sinensis orange1.1g016378m.g I 0.342
Ciclev10015541m.g Citrus clementina Ciclev10015541m.g I 0.342
Cucsa.164290 Cucumis sativus Cucsa.164290 I 0.342
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.342
MDP0000126826 Malus domestica MDP0000126826 I 0.341
OLONG_013342 Oryza longistaminata OLONG_013342 I 0.341
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.341
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.340
Bo7g106320 Brassica oleracea Bo7g106320 I 0.340
Bra012571 Brassica rapa Bra012571 I 0.340
TRIUR3_08676 Triticum urartu TRIUR3_08676 I 0.339
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.339
Eucgr.I00929 Eucalyptus grandis Eucgr.I00929 I 0.339
ORUFI03G35260 Oryza rufipogon ORUFI03G35260 I 0.339
OPUNC03G31000 Oryza punctata OPUNC03G31000 I 0.339
ORGLA03G0308600 Oryza glaberrima ORGLA03G0308600 I 0.339
OGLUM03G33530 Oryza glumaepatula OGLUM03G33530 I 0.339
OBART03G33860 Oryza barthii OBART03G33860 I 0.339
OB03G40890 Oryza brachyantha OB03G40890 I 0.339
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.339
ONIVA03G35150 Oryza nivara ONIVA03G35150 I 0.339
BGIOSGA009826 Oryza indica BGIOSGA009826 I 0.339
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.338
GLYMA11G06010 Glycine max GLYMA11G06010 I 0.338
Carubv10007409m.g Capsella rubella Carubv10007409m.g I 0.338
GLYMA01G39260 Glycine max GLYMA01G39260 I 0.338
OMERI03G31070 Oryza meridionalis OMERI03G31070 I 0.338
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.337
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.337
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.337
Ca_08627 Cicer arietinum Ca_08627 I 0.337
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.336
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.335
TCM_011279 Theobroma cacao TCM_011279 I 0.335
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.334
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.334
PK02428.1 Cannabis sativa PK02428.1 I 0.334
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.334
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.334
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.334
Bo3g157380 Brassica oleracea Bo3g157380 I 0.333
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.333
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.333
Eucgr.C03440 Eucalyptus grandis Eucgr.C03440 I 0.333
Bo1g021700 Brassica oleracea Bo1g021700 I 0.332
Pm010169 Prunus mume Pm010169 I 0.332
30026.m001484 Ricinus communis 30026.m001484 I 0.332
GSMUA_Achr3G27600_001 Musa acuminata GSMUA_Achr3G27600_001 I 0.332
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.332
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.331
Bra022949 Brassica rapa Bra022949 I 0.331
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I 0.331
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.331
Bra009515 Brassica rapa Bra009515 I 0.330
MLOC_51191 Hordeum vulgare MLOC_51191 I 0.330
Bra020988 Brassica rapa Bra020988 I 0.330
Bo9g181780 Brassica oleracea Bo9g181780 I 0.330
fgenesh1_pg.C_scaffold_7000870 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000870 I 0.329
Traes_5BL_E15759DAD Triticum aestivum Traes_5BL_E15759DAD I 0.329
SMU15027452 Schmidtea mediterranea SMU15027452 I 0.329
TRIUR3_25943 Triticum urartu TRIUR3_25943 I 0.329
Eucgr.C03447 Eucalyptus grandis Eucgr.C03447 I 0.328
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.328
Aquca_009_00974 Aquilegia coerulea Aquca_009_00974 I 0.328
mgf001959m Mimulus guttatus mgf001959m I 0.328
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.327
Bo1g005040 Brassica oleracea Bo1g005040 I 0.327
Pavir.J00582 Panicum virgatum Pavir.J00582 I 0.327
LPERR03G28330 Leersia perrieri LPERR03G28330 I 0.327
Ca_09277 Cicer arietinum Ca_09277 I 0.327
Bo1g007320 Brassica oleracea Bo1g007320 I 0.327
Bra017595 Brassica rapa Bra017595 I 0.326
Bo9g062710 Brassica oleracea Bo9g062710 I 0.326
SapurV1A.0208s0230 Salix purpurea SapurV1A.0208s0230 I 0.325
Eucgr.C03454 Eucalyptus grandis Eucgr.C03454 I 0.325
Ca_00428 Cicer arietinum Ca_00428 I 0.325
PK03562.1 Cannabis sativa PK03562.1 I 0.324
Solyc09g009100.2 Solanum lycopersicum Solyc09g009100.2 I 0.324
Bra000235 Brassica rapa Bra000235 I 0.324
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.324
Si036148m.g Setaria italica Si036148m.g I 0.324
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I 0.324
Sb01g008380 Sorghum bicolor Sb01g008380 I 0.324
PGSC0003DMG401002683 Solanum tuberosum PGSC0003DMG401002683 I 0.324
cassava14443.m1 Manihot esculenta cassava14443.m1 I 0.324
Pm005887 Prunus mume Pm005887 I 0.324
Bostr.11568s0011 Boechera stricta Bostr.11568s0011 I 0.324
HSFB3 Arabidopsis thaliana AT2G41690 D 0.324
Bra030341 Brassica rapa Bra030341 I 0.323
HSF4 Populus trichocarpa POPTR_0007s11030 I 0.323
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I 0.323
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I 0.323
SapurV1A.0151s0340 Salix purpurea SapurV1A.0151s0340 I 0.323
SapurV1A.3823s0010 Salix purpurea SapurV1A.3823s0010 I 0.323
Gorai.008G244400 Gossypium raimondii Gorai.008G244400 I 0.322
AT-HSFB3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001910 I 0.322
Cagra.13025s0005 Capsella grandiflora Cagra.13025s0005 I 0.322
GLYMA11G01190 Glycine max GLYMA11G01190 I 0.322
GSMUA_Achr4G17040_001 Musa acuminata GSMUA_Achr4G17040_001 I 0.322
Bostr.2128s0078 Boechera stricta Bostr.2128s0078 I 0.322
Bra011735 Brassica rapa Bra011735 I 0.322
Thhalv10017795m.g Eutrema salsugineum Thhalv10017795m.g I 0.322
MTR_2g017890 Medicago truncatula MTR_2g017890 I 0.322
Aquca_014_00743 Aquilegia coerulea Aquca_014_00743 I 0.322
chr5.CM0359.140.nc Lotus japonicus chr5.CM0359.140.nc I 0.322
Carubv10007333m.g Capsella rubella Carubv10007333m.g I 0.322
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I 0.322
POPTR_0010s11490 Populus trichocarpa POPTR_0010s11490 I 0.321
Bra032023 Brassica rapa Bra032023 I 0.321
SELMODRAFT_107503 Selaginella moellendorffii SELMODRAFT_107503 I 0.321
SELMODRAFT_110881 Selaginella moellendorffii SELMODRAFT_110881 I 0.321
PRUPE_ppa015602mg Prunus persica PRUPE_ppa015602mg I 0.321
HSFA3 Arabidopsis thaliana AT5G03720 I 0.321
Pm026236 Prunus mume Pm026236 I 0.321
29092.m000454 Ricinus communis 29092.m000454 I 0.321
AT-HSFA3 Arabidopsis lyrata scaffold_600303.1 I 0.321
SapurV1A.3884s0010 Salix purpurea SapurV1A.3884s0010 I 0.320
SapurV1A.0029s0230 Salix purpurea SapurV1A.0029s0230 I 0.320
GLYMA13G21490 Glycine max GLYMA13G21490 I 0.320
GLYMA15G09280 Glycine max GLYMA15G09280 I 0.320
Eucgr.C03457 Eucalyptus grandis Eucgr.C03457 I 0.320
ORUFI03G43230 Oryza rufipogon ORUFI03G43230 I 0.320
gene30146-v1.0-hybrid Fragaria vesca gene30146-v1.0-hybrid I 0.320
Lus10040911.g Linum usitatissimum Lus10040911.g I 0.320
AMAG_05583 Allomyces macrogynus AMAG_05583 I 0.319
ATHSFA1E Arabidopsis lyrata fgenesh2_kg.3__246__AT3G02990.1 I 0.319
HSFA1E Arabidopsis thaliana AT3G02990 D 0.319
Thhalv10025116m.g Eutrema salsugineum Thhalv10025116m.g I 0.319
Lus10014369.g Linum usitatissimum Lus10014369.g I 0.319
Aquca_039_00029 Aquilegia coerulea Aquca_039_00029 I 0.319
cassava3540.m1 Manihot esculenta cassava3540.m1 I 0.319
Carubv10013628m.g Capsella rubella Carubv10013628m.g I 0.319
Bostr.19046s0011 Boechera stricta Bostr.19046s0011 I 0.319
Cagra.1194s0002 Capsella grandiflora Cagra.1194s0002 I 0.319
Eucgr.C03435 Eucalyptus grandis Eucgr.C03435 I 0.319
AMAG_01384 Allomyces macrogynus AMAG_01384 I 0.319
Lus10023866.g Linum usitatissimum Lus10023866.g I 0.319
PHLGIDRAFT_123599 Phlebiopsis gigantea PHLGIDRAFT_123599 I 0.319
Gorai.013G183500 Gossypium raimondii Gorai.013G183500 I 0.319
scaffold_801962.1 Arabidopsis lyrata scaffold_801962.1 I 0.319
M413DRAFT_446777 Hebeloma cylindrosporum M413DRAFT_446777 I 0.319
SCHCODRAFT_65208 Schizophyllum commune SCHCODRAFT_65208 I 0.319
Cla009875 Citrullus lanatus Cla009875 I 0.318